PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_203750_gcik.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 931aa    MW: 104483 Da    PI: 6.4822
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_203750_gcik.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Bv9_203750_gcik.t1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI- 215
                         99*****************************96555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Bv9_203750_gcik.t1 216 -WNEKNQLLLGIRRA 229
                         .8899999****997 PP
2Auxin_resp118.84.3e-39254337183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+v++nPras+seFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWp S+Wrs+k
  Bv9_203750_gcik.t1 254 AAHAASTNSRFTVFFNPRASPSEFVVPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVK 337
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.07E-48114257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-42120243IPR015300DNA-binding pseudobarrel domain
CDDcd100175.64E-22127228No hitNo description
PfamPF023626.6E-22128229IPR003340B3 DNA binding domain
SMARTSM010191.5E-24128230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548128230IPR003340B3 DNA binding domain
PfamPF065074.7E-34254337IPR010525Auxin response factor
PfamPF023092.2E-7787881IPR033389AUX/IAA domain
SuperFamilySSF542774.05E-7792870No hitNo description
PROSITE profilePS5174523.246796881IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPAQLICQLH DVTMHADVET DEVYSQMTLQ PLTLQEQKDV CLLPAELGTA  120
SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYT QQPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVIFIWNEKN QLLLGIRRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAST NSRFTVFFNP RASPSEFVVP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPS SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSPF PLRLKRPWPS GLPSFPVLKD GDMGLNSPLM WLQREVGDRC MPSLNFQGYG  420
LTPWMQPRLD SAMLGLQPDI FQTMASSALH DPRGLEKRPN QSLLQFQPNQ NVSCQPSSLI  480
QNQLLQQAQS QQTLVQSFQE NQTVAQNQVH SQLLQQQLQN CRSYNDHHHH QQQQQQQQQQ  540
QQHQQQQQQQ HQQQQQQQQQ QHHQHQQLPH FEQLRNQFSD QQQIAKVISK TPPFGPSTQS  600
LPTSLETISS PCPQQLFSNS IMNSVTAADI SPMHSLLNSF SLDGGSRQVT LTDSNPLVSS  660
TPLLSKRVAV EPQLSSTAPC SLPQVEDLAG PQSRISELSS LLPPLPGRDF SIYHGIGDPQ  720
NNLLFGVNVQ QNELANLRSH NNENDSLSMQ FACSSFPSAA GTDFPPASDI MATSCVDESG  780
FLQSSENDDH VNPPSGTFVK VQKSGSLGRS LDISKFSSYQ ELRSELAHMF GLEGQLEDPL  840
RSGWQLVFVD RENDVLLLGD DPWQEFVNNV WYIKILSPQE VQQMGKEGLN FPNSIPRPKH  900
QNSFNSCDDY TLQQDLRHNS NGMASVTSLD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621635847388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688802.10.0PREDICTED: auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0K9R1E50.0A0A0K9R1E5_SPIOL; Auxin response factor
STRINGXP_010688801.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]