PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_203750_gcik.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ARF
Protein Properties Length: 934aa    MW: 104828 Da    PI: 6.4817
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_203750_gcik.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.65.7e-24131232199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Bv9_203750_gcik.t2 131 FCKTLTASDTSTHGGFSVPRRAAEKVfppldytQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI- 218
                         99*****************************96555555..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Bv9_203750_gcik.t2 219 -WNEKNQLLLGIRRA 232
                         .8899999****997 PP
2Auxin_resp118.84.3e-39257340183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+v++nPras+seFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWp S+Wrs+k
  Bv9_203750_gcik.t2 257 AAHAASTNSRFTVFFNPRASPSEFVVPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVK 340
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.09E-48117260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-42123246IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-22130231No hitNo description
PfamPF023626.7E-22131232IPR003340B3 DNA binding domain
SMARTSM010191.5E-24131233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548131233IPR003340B3 DNA binding domain
PfamPF065074.7E-34257340IPR010525Auxin response factor
PfamPF023092.2E-7790884IPR033389AUX/IAA domain
SuperFamilySSF542774.05E-7795873No hitNo description
PROSITE profilePS5174523.246799884IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 934 aa     Download sequence    Send to blast
MRLSSSGFPH QPEEGEKKVL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQCLQVAAST  60
NKEVDAHIPN YPSLPAQLIC QLHDVTMHAD VETDEVYSQM TLQPLTLQEQ KDVCLLPAEL  120
GTASKQPTNY FCKTLTASDT STHGGFSVPR RAAEKVFPPL DYTQQPPAQE LIARDLHDNE  180
WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN EKNQLLLGIR RANRPQTVMP  240
SSVLSSDSMH IGLLAAAAHA ASTNSRFTVF FNPRASPSEF VVPLAKYVKA VYHTRVSVGM  300
RFRMLFETEE SSVRRYMGTI TGISDLDPVR WPSSHWRSVK VGWDESTAGE RQPRVSLWEI  360
EPLTTFPMYP SPFPLRLKRP WPSGLPSFPV LKDGDMGLNS PLMWLQREVG DRCMPSLNFQ  420
GYGLTPWMQP RLDSAMLGLQ PDIFQTMASS ALHDPRGLEK RPNQSLLQFQ PNQNVSCQPS  480
SLIQNQLLQQ AQSQQTLVQS FQENQTVAQN QVHSQLLQQQ LQNCRSYNDH HHHQQQQQQQ  540
QQQQQHQQQQ QQQHQQQQQQ QQQQHHQHQQ LPHFEQLRNQ FSDQQQIAKV ISKTPPFGPS  600
TQSLPTSLET ISSPCPQQLF SNSIMNSVTA ADISPMHSLL NSFSLDGGSR QVTLTDSNPL  660
VSSTPLLSKR VAVEPQLSST APCSLPQVED LAGPQSRISE LSSLLPPLPG RDFSIYHGIG  720
DPQNNLLFGV NVQQNELANL RSHNNENDSL SMQFACSSFP SAAGTDFPPA SDIMATSCVD  780
ESGFLQSSEN DDHVNPPSGT FVKVQKSGSL GRSLDISKFS SYQELRSELA HMFGLEGQLE  840
DPLRSGWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS PQEVQQMGKE GLNFPNSIPR  900
PKHQNSFNSC DDYTLQQDLR HNSNGMASVT SLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591636147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688801.10.0PREDICTED: auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0K9R1E50.0A0A0K9R1E5_SPIOL; Auxin response factor
STRINGXP_010688801.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]