PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_203950_yfks.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WOX
Protein Properties Length: 398aa    MW: 44707.3 Da    PI: 7.0407
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_203950_yfks.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.73.6e-2293152357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Bv9_203950_yfks.t1  93 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrsygKIEGKNVFYWFQNHKARERQ 152
                         7*****************99**************************************97 PP
2Wus_type_Homeobox115.13.5e-3792154365
   Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Bv9_203950_yfks.t1  92 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRSYGKIEGKNVFYWFQNHKARERQKR 154
                         79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.27288153IPR001356Homeobox domain
SMARTSM003894.9E-690157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-993152IPR009057Homeodomain-like
SuperFamilySSF466893.29E-1293158IPR009057Homeodomain-like
PfamPF000467.2E-2093152IPR001356Homeobox domain
CDDcd000863.31E-694150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MMGYNEFANQ DQLNLVDPFK GGRKLRPLAP RPYLSPQNHN NNNNVNTAAC LTAFHNPTNH  60
LLSLNTTARH QNHLVGVEEG KEVVGTNQVM VSSRWNPTPE QLRALEELYR RGTRTPSAEQ  120
IQHITAQLRS YGKIEGKNVF YWFQNHKARE RQKRRRQLQL QLPPPPSSGG SAIGGNKIGF  180
EGEQKSNKWA PSSTNKESDP PIHISEEAGL TKADHQTTTS DNNNNGWIQF HQTPEFQHNH  240
TTNNNITNHN ISHISSGKNL LFAGQRNGTW QSQNNNIMVQ PSSSSCSCCY PSPPLPSILP  300
FSLSSSSIII PKDLNQSPDK QVNSGERRVS SSLSLSSSSS PTLQLFPVLR EDEDEDEDDD  360
ENSIVVAIMN KEKEEERENK DSSMVINSNN PFPYYQFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688870.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A0K9R3X61e-114A0A0K9R3X6_SPIOL; Uncharacterized protein
STRINGXP_010688870.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-38WUSCHEL related homeobox 1