PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_204300_zmfg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 441aa    MW: 49073.4 Da    PI: 8.0204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_204300_zmfg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-104267126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++++ C +++rtG C yG +C+F+H+
  Bv9_204300_zmfg.t1 42 PGEPDCLYYLRTGLCDYGTNCRFNHP 67
                        5789*********************8 PP
2zf-CCCH35.51.6e-1186110226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C ++++t tCkyG++Ck++H+
  Bv9_204300_zmfg.t1  86 GQPDCGYYMKTATCKYGSSCKYHHP 110
                         6799********************9 PP
3zf-CCCH30.27.6e-10132156327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C++++rt  Ck+G+ CkF H++
  Bv9_204300_zmfg.t1 132 EKPCPHYMRTYACKFGPACKFDHPQ 156
                         689********************97 PP
4zf-CCCH39.21.2e-12278303227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Crff+ tG CkyG++CkF+H++
  Bv9_204300_zmfg.t1 278 DQPECRFFMSTGSCKYGSNCKFHHPK 303
                         689*********************96 PP
5zf-CCCH246.6e-08324345627
                         -SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                         C++f  +G+CkyG++Ck+ H++
  Bv9_204300_zmfg.t1 324 CSYFNSYGFCKYGPTCKYDHPM 345
                         ********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6574169IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-54168IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-84367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-54667IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-44766IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.73284112IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-584111IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-986110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-689113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22129157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5129157IPR000571Zinc finger, CCCH-type
SMARTSM003560.0098131156IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4133155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.896276304IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6276303IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-7279305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6282303IPR000571Zinc finger, CCCH-type
SMARTSM003560.01318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375318346IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-5321345IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6323345IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MPDHRKTQTN GPVHNIQEGV AKMKIEKKEG GDRELMEYPD RPGEPDCLYY LRTGLCDYGT  60
NCRFNHPSLP PIKTPQDRSE LPQREGQPDC GYYMKTATCK YGSSCKYHHP LDRRGAGQVA  120
LNTLGLPIRK EEKPCPHYMR TYACKFGPAC KFDHPQPASL ESDLPIPGAA AIGTMGSTLP  180
STGIPYVGPL PPWQLSRSSY VASSCVPGPQ TYMPFVFPPL QSSLTAQNWN NYMQGNLRTI  240
SSSNMILPNY VHNSTSQVTG GPSDLVMQAY YNLPERPDQP ECRFFMSTGS CKYGSNCKFH  300
HPKERIAYNL GPHGLPFRPG KDHCSYFNSY GFCKYGPTCK YDHPMYVSYS LGMPPVPLVD  360
VGLFPKARNM VISNSTETSN SKSTKITDWI QKPDTVISDK NRTKSVKNSV EDPHEEVHDD  420
QPNAAVAVDA PSSKVPLDQS D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688919.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
RefseqXP_010688920.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLD7TEE81e-150D7TEE8_VITVI; Uncharacterized protein
STRINGXP_010688919.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-91C3H family protein