PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_206210_rcfg.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 343aa MW: 37459.1 Da PI: 6.7271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_206210_rcfg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H Bv9_206210_rcfg.t1 137 YECKTCNKTFPSFQALGGHRTSH 159 99*********999998888777 PP
2	zf-C2H2	12.8	0.00036	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Bv9_206210_rcfg.t1 239 HECSICGSEFPSGQALGGHMRRH 261 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.8E-13	136	161	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-6	136	159	No hit	No description
PROSITE profile	PS50157	10.596	137	164	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	137	159	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.02E-6	234	261	No hit	No description
Pfam	PF13912	3.1E-12	238	262	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.39	239	266	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	239	261	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	241	261	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MESTEEEFSS FITKGRRTKR QRSLLAASAS SSYRGGGGGG GGDDDGIVVV GGGCSDNSYG 60 SSSSDASPSD EHDIMSEVTT EEEDMANCLI LLAQGRIHKE KKPSINIKSK TNNNNNNNNK 120 NNNNNSCTSI TSNIGVYECK TCNKTFPSFQ ALGGHRTSHK KIKSSAATMT TTTTTTTTTA 180 LRSPDHENNH YNRVIRHDHH VVDELDRMEF ITSSKKFIVV QTQHHENNNN NNNNKARVHE 240 CSICGSEFPS GQALGGHMRR HRTAAAVPGR PMMITTTTTT AEATAVIDTG GPRNILSLDL 300 NLPAPDDQDD QHQQQQHIDV DDHMETKFVH VLPTPAPLVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MESTEEEFSS FITKGRRTKR QRSLLAASAS SSYRGGGGGG GGDDDGIVVV GGGCSDNSYG  60
SSSSDASPSD EHDIMSEVTT EEEDMANCLI LLAQGRIHKE KKPSINIKSK TNNNNNNNNK  120
NNNNNSCTSI TSNIGVYECK TCNKTFPSFQ ALGGHRTSHK KIKSSAATMT TTTTTTTTTA  180
LRSPDHENNH YNRVIRHDHH VVDELDRMEF ITSSKKFIVV QTQHHENNNN NNNNKARVHE  240
CSICGSEFPS GQALGGHMRR HRTAAAVPGR PMMITTTTTT AEATAVIDTG GPRNILSLDL  300
NLPAPDDQDD QHQQQQHIDV DDHMETKFVH VLPTPAPLVD CHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689246.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A0J8EGZ2	0.0	A0A0J8EGZ2_BETVU; Uncharacterized protein
STRING	XP_010689246.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-32	C2H2 family protein