PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_206330_dkhx.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 687aa MW: 79304.4 Da PI: 6.3345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_206330_dkhx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.6e-23	67	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w v+++++ HnHe Bv9_206330_dkhx.t1 67 EYYSNFARKNGFSIRKARSTESHNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWFVSQFSNVHNHE 156 69******************7777.**************************************998766789*********** PP FAR1 89 la 90 l Bv9_206330_dkhx.t1 157 LL 158 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-21	67	158	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-19	291	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.656	562	597	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.4E-8	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-4	572	599	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MKPANNIWIQ KEQCPCGDWK CFIKYDGEEQ GQACQPTKEG TLLSSSSEVV FAPYVGQIFS 60 TDDEALEYYS NFARKNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KANVEHPRDR 120 KSVRCGCDAK LYLTKEIVNG VTQWFVSQFS NVHNHELLED DQVRLLPAYR KIQEADQERI 180 LLLSKAGFPV NRIIKILELE KGVQPGQLPF IEKDIRNFVR TCKKTVLEND ALLTEKRITD 240 MMELLEACKA MSERDGDFVF DFLTDTTGKV ENIAWSYGDS VRAFDLFGDA VQFDITYQSI 300 TYGVLLGLLS GVDNHGKPIF FACALLQEEN SHAFVWALQT FVRFMRGRHP QTIVTDLDPG 360 LRDAIASELP NTKHIISIWY IMSKLSSWFS LPLGLKYSEL KSEFEMVSYA ESIEEFEHHW 420 SHLITRFGLG SDKHISLLSS YRASWAFSYI RDCFVARITT VEYMRSLDNF LKDILNEQTC 480 LQVFFEQVAL AANLGYGAKE GIDYIHLKTC MPVEEHAESI LTPYAFSVYQ HELVLSMQYA 540 LIEMGKGSYV VRHYKKTEGE YLLIWIAEDE QIHCSCKGFE HSGILCRHAL RLFSTKNYFQ 600 LPDKYFPFRW RLESSLVPTG QESTRPIKEE YYHALHSLTD TLVTESLVSK ERFNYVHKEL 660 TTLLDHVKNM PVTEVAREIL TNNFNES

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MKPANNIWIQ KEQCPCGDWK CFIKYDGEEQ GQACQPTKEG TLLSSSSEVV FAPYVGQIFS  60
TDDEALEYYS NFARKNGFSI RKARSTESHN LGVYRRDFVC YRSGFNQPRK KANVEHPRDR  120
KSVRCGCDAK LYLTKEIVNG VTQWFVSQFS NVHNHELLED DQVRLLPAYR KIQEADQERI  180
LLLSKAGFPV NRIIKILELE KGVQPGQLPF IEKDIRNFVR TCKKTVLEND ALLTEKRITD  240
MMELLEACKA MSERDGDFVF DFLTDTTGKV ENIAWSYGDS VRAFDLFGDA VQFDITYQSI  300
TYGVLLGLLS GVDNHGKPIF FACALLQEEN SHAFVWALQT FVRFMRGRHP QTIVTDLDPG  360
LRDAIASELP NTKHIISIWY IMSKLSSWFS LPLGLKYSEL KSEFEMVSYA ESIEEFEHHW  420
SHLITRFGLG SDKHISLLSS YRASWAFSYI RDCFVARITT VEYMRSLDNF LKDILNEQTC  480
LQVFFEQVAL AANLGYGAKE GIDYIHLKTC MPVEEHAESI LTPYAFSVYQ HELVLSMQYA  540
LIEMGKGSYV VRHYKKTEGE YLLIWIAEDE QIHCSCKGFE HSGILCRHAL RLFSTKNYFQ  600
LPDKYFPFRW RLESSLVPTG QESTRPIKEE YYHALHSLTD TLVTESLVSK ERFNYVHKEL  660
TTLLDHVKNM PVTEVAREIL TNNFNES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689264.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010689265.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010689266.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_010689268.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107319.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107320.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107321.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107322.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107323.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107324.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107325.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107326.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107327.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019107328.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0J8BM06	0.0	A0A0J8BM06_BETVU; Uncharacterized protein
STRING	XP_010689263.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]