PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_207070_tnaw.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 616aa MW: 69081.5 Da PI: 6.9585

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_207070_tnaw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.5	1.9e-22	78	169	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnH 87 fY++YA+ GFs++++++kk+ +g++++r+f+C ++ ++ ++ + +ke+r+r++t+++C+a+l+vk+++ ++w+vt++ +eHnH Bv9_207070_tnaw.t1 78 FYDNYARLHGFSIKRDRTKKK--DGKMVRRDFYCHRSRTQPLKNLDPNKEQRNRVSTKCNCNAHLRVKLRRnneifPEEWHVTTFTQEHNH 166 9************998777..999**************999*****************99864444578********** PP FAR1 88 ela 90 +l Bv9_207070_tnaw.t1 167 PLL 169 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-19	78	169	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MLLDLNELPY NGEMVAFMGE DISDIVVQNG EMNAENYTRH TFTHVQLLDN EEETIPEQLN 60 LEPFVGQTFQ SEEEARVFYD NYARLHGFSI KRDRTKKKDG KMVRRDFYCH RSRTQPLKNL 120 DPNKEQRNRV STKCNCNAHL RVKLRRNNEI FPEEWHVTTF TQEHNHPLLS RSQVRFLPAN 180 RMISQEDEKR ILLLKEAGLA VRQIIRVLEL EKDVEHGELP FLEKDIRNLF TRVKKTVSGD 240 DVANLLQYFK SCKEENSNFH YIVKVDHEGK LEHLLWCPAQ SIDWFATDLS LLRGRVALIE 300 HEKKRLTDEM ERMKKKTEKR KGCESSXKIA SVELEACDML MVDLVTLGTK TLDAPGCDPL 360 ELVAPLLFPA LEAPCLVYLE VFAPTLDPFE VVGNAFGADA FEAAAGADAF EAAALADAFG 420 AAALADTFGA AVVLETKIGF PSFMLLVNEV TPPPRSFGRH SRLNQNPNTF SLLSSITLKN 480 KTPKKTPKPI LSPPRQTLCF SLAHLRCASP AFSEAAGDPH HSLLLYFVVV NVVRGCRLAS 540 LLSVRRVAPR PPTLPELSSS ARVAAGVVVV IRFLPSPPLS CFLSPVRVSL LCCCALVLSP 600 LFLLVDVAVV AVDVPP

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MLLDLNELPY NGEMVAFMGE DISDIVVQNG EMNAENYTRH TFTHVQLLDN EEETIPEQLN  60
LEPFVGQTFQ SEEEARVFYD NYARLHGFSI KRDRTKKKDG KMVRRDFYCH RSRTQPLKNL  120
DPNKEQRNRV STKCNCNAHL RVKLRRNNEI FPEEWHVTTF TQEHNHPLLS RSQVRFLPAN  180
RMISQEDEKR ILLLKEAGLA VRQIIRVLEL EKDVEHGELP FLEKDIRNLF TRVKKTVSGD  240
DVANLLQYFK SCKEENSNFH YIVKVDHEGK LEHLLWCPAQ SIDWFATDLS LLRGRVALIE  300
HEKKRLTDEM ERMKKKTEKR KGCESSXKIA SVELEACDML MVDLVTLGTK TLDAPGCDPL  360
ELVAPLLFPA LEAPCLVYLE VFAPTLDPFE VVGNAFGADA FEAAAGADAF EAAALADAFG  420
AAALADTFGA AVVLETKIGF PSFMLLVNEV TPPPRSFGRH SRLNQNPNTF SLLSSITLKN  480
KTPKKTPKPI LSPPRQTLCF SLAHLRCASP AFSEAAGDPH HSLLLYFVVV NVVRGCRLAS  540
LLSVRRVAPR PPTLPELSSS ARVAAGVVVV IRFLPSPPLS CFLSPVRVSL LCCCALVLSP  600
LFLLVDVAVV AVDVPP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-55	FAR1-related sequence 11