PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_207540_dxfc.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 539aa MW: 62101.5 Da PI: 4.5764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_207540_dxfc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.6	1.5e-05	404	449	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r R ++i ++ L llP + +++ a++Le+Av+YIk L+ Bv9_207540_dxfc.t1 404 KRRSMRQRKISEKVYCLGMLLPGG---YRHRNNTADMLEEAVKYIKFLE 449 555678889999999999999998...899****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.026	397	448	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-4	401	454	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-8	408	459	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.60E-5	409	452	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-6	412	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MWGNVKFIND LPTNFDPSYL KGLINSLGYN NIVKLHYCDP LKELHKGIRF LGYDGTTFGM 60 FISLLYEFKM LDIFTEHDEG EVECLTQETV VSNTCKDVIV GNMVCEPLSH YSSGSDDIDY 120 DEEGSDTEDD EVREAREQLQ EDKRREKSYE EEIDSLSRLA ARKCVHNGDS DYEGESSDFD 180 SPHNSDGEDS TPEDQNYETH FQNFQTMPYS DTDKYNENPL LVHDYTTYFL SPHSLFLPPP 240 PPPSSLNFID PTSSDFSTLP DLFSVENLTH SPSPPLPLLK DDYSEISNDK KPLKKSDISE 300 EVYSPLSFLS FLIAPPIHNI PENKNYETHF KNILTMPYSE DDKYNNFLYR HLSPPSSDFI 360 IPTSSDFSTT LLPNFPPSKD DYSLHSILEN FKTTKEDKKK KLQKRRSMRQ RKISEKVYCL 420 GMLLPGGYRH RNNTADMLEE AVKYIKFLEA QVNALWCMPT ESRIGELRDD GRDVYSSVVG 480 ELVKLSRPEL LQVVVNSPVA QKVMADNQWC LYSIEQMELL KRMEARQKVI HQFMNNLPL

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MWGNVKFIND LPTNFDPSYL KGLINSLGYN NIVKLHYCDP LKELHKGIRF LGYDGTTFGM  60
FISLLYEFKM LDIFTEHDEG EVECLTQETV VSNTCKDVIV GNMVCEPLSH YSSGSDDIDY  120
DEEGSDTEDD EVREAREQLQ EDKRREKSYE EEIDSLSRLA ARKCVHNGDS DYEGESSDFD  180
SPHNSDGEDS TPEDQNYETH FQNFQTMPYS DTDKYNENPL LVHDYTTYFL SPHSLFLPPP  240
PPPSSLNFID PTSSDFSTLP DLFSVENLTH SPSPPLPLLK DDYSEISNDK KPLKKSDISE  300
EVYSPLSFLS FLIAPPIHNI PENKNYETHF KNILTMPYSE DDKYNNFLYR HLSPPSSDFI  360
IPTSSDFSTT LLPNFPPSKD DYSLHSILEN FKTTKEDKKK KLQKRRSMRQ RKISEKVYCL  420
GMLLPGGYRH RNNTADMLEE AVKYIKFLEA QVNALWCMPT ESRIGELRDD GRDVYSSVVG  480
ELVKLSRPEL LQVVVNSPVA QKVMADNQWC LYSIEQMELL KRMEARQKVI HQFMNNLPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010689501.2	0.0	PREDICTED: uncharacterized protein LOC104903199

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-14	bHLH family protein