PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208060_feno.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 818aa    MW: 90129.3 Da    PI: 5.0944
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208060_feno.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-066489226
                        -S---SGGGGTS.--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartG.tCkyGdrCkFaHg 26
                        kt+ C++f+r+   C++G+ C+FaH 
  Bv9_208060_feno.t1 64 KTSMCSYFRRNSgSCSHGEGCRFAHN 89
                        899*******989************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.4E-125895IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-75995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5736291IPR000571Zinc finger, CCCH-type
CDDcd005908.68E-5146208No hitNo description
Gene3DG3DSA:3.30.70.3303.6E-5146208IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549287.43E-6146223IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168748.49266818IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533352.61E-49268294IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.61E-49326429IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.61E-49510623IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.6E-64517623IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138479.3E-9567626IPR025714Methyltransferase domain
CDDcd024401.87E-5569623No hitNo description
Gene3DG3DSA:3.40.50.1502.6E-64698758IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.61E-49706763IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.1E-7706754IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300714746IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.6E-64793818IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533352.61E-49802818IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MATSHEPEPK TLEIETQNPT PNSISEEPNL SNPSPESSVK RKREEEEQEV EEDVPKKTKH  60
PLHKTSMCSY FRRNSGSCSH GEGCRFAHNE EELQPRPDGS WDPTSDRVKR REIENVEEEE  120
EEEKSVMMTE ILAESGDPQL SKCLIHLPRK WNSDQLKTFL DEQGVIFKSA KKKKGMSVGF  180
LTFETAEQVS SATEVLGGKS IGKEKLKIGD VIPRSYDEKI KSAQKRYQNL IPGVVDETEA  240
TLASNDNASG EEVNGSASRG RSARDVVTPL AHLSYPEQLD KKKNSLMQIL KRLTRNARKA  300
CPKGVPLPAW AVNSREIGGL PCKLEGIIES PLINGYRNKC EFSVGYSVQG KPTVGFMLGN  360
FREGVTAVEE PTDCPNVSKI ACKYALVFQE FLQDSGLPIW NRFNNTGFWR QLTVREGRNP  420
QKDIELEVEN PGANISEAML IVQVSTEGHD DDLVSNELEK LTRAFVTGAA STCPPLPLTA  480
LALQDHRGIS NAAAADTPLR PLPIPTAQSS SEAEVVMATN ESRIHDYIGN LRFSISPTAF  540
FQVNTLAAEK LYTLAGDWAG LGPDTLLFDV CCGTGTIGLT LANHVGMVVG IEMNASAVSD  600
AQRNAEINAI TNCKFICSKA EDVMGSLLKE YLDDSEDQDD TSNPLDNDGK QNSTGENQIS  660
VNNEAHPEDC LNEVNVDADH ACDVNKGEQD LQSNNVNDES SAKQHFKNVV AIVDPPRSGL  720
HPVVLKALRT HPRLRRLVYI SCNPETLVAN AIELCTPLSE TTEKGRKGQG WRNMSNAGLA  780
RHRLKSMPKS EPFQPVKAMA VDLFPHTPHC ELVMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5zq0_A3e-20525630263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A3e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-20525630262371Uncharacterized RNA methyltransferase SP_1029
5zth_A3e-20525630263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689563.10.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A0K9QW580.0A0A0K9QW58_SPIOL; Uncharacterized protein
STRINGXP_010689563.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]