PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208100_jgpz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YC
Protein Properties Length: 254aa    MW: 28697.3 Da    PI: 10.4652
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208100_jgpz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC32.32.2e-101462341299
               NF-YC  12 katdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                         k+++  + ++P  ri +i+k++     ++s ea  l+ ka e fi  ++  ++  a e ++r +    +a++v + + fdfl d vp++
  Bv9_208100_jgpz.t1 146 KNEESSECAFPTNRILRIVKSEGSSdYKLSGEAVCLINKATEKFIELFSKDAYDSAVEDHKRFVAYKHLASVVCKKKRFDFLSDFVPEK 234
                         455666789************97652589****************999999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.3E-12155218IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-17155233IPR009072Histone-fold
SuperFamilySSF471132.44E-14172234IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSTGQRFEKT FSRKNKEANK KNNEGKKSEQ QQQHVPESSS SQQLNGKLDN PSNKINNSTK  60
STVAKQPTNK NKKTSPTTTT KKPNNNNNTV KKKKNVSDSP KPEQKKEKIR EKNEEKDETQ  120
KQKRKTENGG GEIEKKPKTM KTTSSKNEES SECAFPTNRI LRIVKSEGSS DYKLSGEAVC  180
LINKATEKFI ELFSKDAYDS AVEDHKRFVA YKHLASVVCK KKRFDFLSDF VPEKVMAEKA  240
LAERKPAETL PPPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122137KRKTENGGGEIEKKPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689566.10.0PREDICTED: DNA polymerase epsilon subunit C
RefseqXP_010689567.10.0PREDICTED: DNA polymerase epsilon subunit C
TrEMBLA0A0K9QJH22e-77A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010689566.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-28nuclear factor Y, subunit C10