PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208220_dkcc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family S1Fa-like
Protein Properties Length: 70aa    MW: 7666.28 Da    PI: 10.7353
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208220_dkcc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA144.71.7e-45270270
                S1FA  2 avakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        av+++eakG+nPGlivllvvgglll+flvgnyily+yaqknlPP+kkkPvskkk+kreklkqGva+PGe
  Bv9_208220_dkcc.t1  2 AVNEAEAKGFNPGLIVLLVVGGLLLTFLVGNYILYTYAQKNLPPKKKKPVSKKKMKREKLKQGVAPPGE 70
                        7899****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190137.0E-6170No hitNo description
PfamPF046893.2E-40670IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MAVNEAEAKG FNPGLIVLLV VGGLLLTFLV GNYILYTYAQ KNLPPKKKKP VSKKKMKREK  60
LKQGVAPPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX795435e-75X79543.1 S.oleracea s1fa mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107347.17e-42PREDICTED: DNA-binding protein S1FA
SwissprotQ423371e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLW9SCA33e-25W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010689579.13e-41(Beta vulgaris)