PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208530_ycgs.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family CO-like
Protein Properties Length: 411aa    MW: 44928.9 Da    PI: 4.7449
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208530_ycgs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.9e-07444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         C+ ++e++ + +C+++  +lC +C  + H+       H++
  Bv9_208530_ycgs.t1  4 LCDYCGEQRSTVYCRSDAAFLCLSCDRNVHSAnalskrHSR 44
                        6*****************************65667777765 PP
2CCT63.37.2e-22354397144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R +a++RYkeK+ktR+FeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Bv9_208530_ycgs.t1 354 RTEAVMRYKEKKKTRQFEKRVRYASRKARADVRKRVKGRFVKAG 397
                         89***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
CDDcd000211.07E-8447No hitNo description
PROSITE profilePS501198.6744390IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398354396IPR010402CCT domain
PfamPF062039.3E-17354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGLLCDYCGE QRSTVYCRSD AAFLCLSCDR NVHSANALSK RHSRTLVCER CNVQPACVRC  60
IDEGVSLCQN CNVQGHDWST TSSLHQQQSI NYYSGCPSAA ELSKIWSFIS DNPDPLTDNS  120
TCQEGLGLLS ISESGGAKDC IDPVGSDNEQ AAMVVVGGSD LQTVNKSFVW NGPAYITERE  180
FPDQPGCAES SKLFYPTNRV PGINEDDPFA DLDMDEVDIN FENYNELFGV TLTHSEKLLE  240
NGGINSLFPR QDISTADSDC QGGFSVEGAS VGVTGQMQPV ISTAQSADSI MSVKTEPNHS  300
FAAKPALSSL SFSGITGESS GGDYQDCGAS SMLLLGEPPW CPPCPENSYQ TITRTEAVMR  360
YKEKKKTRQF EKRVRYASRK ARADVRKRVK GRFVKAGDAY DYDPLNHTRS F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689670.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10
SwissprotQ9LUA91e-133COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A061DL860.0A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1
STRINGXP_010689670.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-116B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]