PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_208590_puum.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 415aa    MW: 47044.2 Da    PI: 6.1163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_208590_puum.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19205255256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Bv9_208590_puum.t1 205 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDREAYKLRGE 255
                         59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.77E-34204264No hitNo description
Gene3DG3DSA:3.30.730.104.1E-32205263IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22205263IPR016177DNA-binding domain
PROSITE profilePS5103222.84205262IPR001471AP2/ERF domain
SMARTSM003802.0E-39205268IPR001471AP2/ERF domain
PfamPF008474.5E-12206255IPR001471AP2/ERF domain
PRINTSPR003678.2E-11206217IPR001471AP2/ERF domain
PRINTSPR003678.2E-11228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MSSNMSRKAK EMTDGMENMS KMRWDGHKVK EHHQQWTQVF DEASTAAGRP WKKVRSPERQ  60
QLSGISGHSL SQSMSQPHNP FPYTNTASKI SFPFTFEGSS NNGSQPQYSV LNPEIIPQYG  120
QQHQQQQQQQ QQQQMISFNQ GIGNQYQYIP MATNQQLQQL QYCSDALNLS PRGKMMMMNR  180
FTAQGFGRQI PQGGGPVPPI STTKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAED  240
AALAYDREAY KLRGENARLN FPELFLNKDR VEETTLSSST QPQEMQIPPP PPPPPIIEVD  300
PEDSSGDGSS DVTFISEPGH PTGKGGSDNS EFAWKEMSEA WFNAIPAWGP GSPFWDDLDT  360
NNLFMQPNIS ITPNFSQQDD QEAKFNFRQP EEIVGSSSYS STSCPMRPFF SKDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21204262160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689679.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A0K9QL681e-155A0A0K9QL68_SPIOL; Uncharacterized protein
STRINGXP_010689679.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-48ERF family protein