PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_209620_ccoj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family G2-like
Protein Properties Length: 432aa    MW: 47449.9 Da    PI: 6.6047
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_209620_ccoj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.6e-28174228156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  Bv9_209620_ccoj.t1 174 KTKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 228
                         6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.937171230IPR017930Myb domain
SuperFamilySSF466898.06E-19172231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-27172231IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26174228IPR006447Myb domain, plants
PfamPF002494.6E-8177226IPR001005SANT/Myb domain
PROSITE patternPS000740251264IPR033524Leu/Phe/Val dehydrogenases active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MLAVSPLSTT KDGNNKGDAM EANFTVGSDD FPDFSGANLL DSIDFDELFM GMHDGDMLPD  60
LEMDPELLAE FSISGGEESS EANNSSTMSV DNIISPTNDG HLTLLETNDV ISDVLEKEFM  120
EKHGLMLVKF PEEEIQSKKD VKSTKESDKV KKSSSNSKSG ANNNNSNNNH GKRKTKVDWT  180
PELHRRFVQA VEQLGVDKAV PSRILELMGI DCLTRHNIAS HLQKYRSHRK HLLAREAEAA  240
SWTQKRQMYG VAMGGSKGGA NISPWYLPTM GFPPITTMHP PFRPLHVWGH PTMDPQARMP  300
MWPKQVVPSA APLPPGWAPP PPHPPPADPS FWHSSHQRRV ATAPVRGIPP QTMYRPEQRG  360
VPPHPPPAPA PQSGSHPSFE LHPSKESIDA ALGDVLAKPW LPLPIGLKPP SMDCVLVELQ  420
RQGVPKIPPS CA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-16171226257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689789.10.0PREDICTED: probable transcription factor GLK1 isoform X2
TrEMBLA0A0K9RD600.0A0A0K9RD60_SPIOL; Uncharacterized protein
STRINGXP_010689788.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-71GBF's pro-rich region-interacting factor 1