PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_209790_gwcy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family Trihelix
Protein Properties Length: 291aa    MW: 32761.8 Da    PI: 9.919
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_209790_gwcy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.41.8e-1330118186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W +q +  Liea  + + +l+rg+l+++ W++v++++    ++  +   ++Ck++++ l+k+yk +k    + + + +s +p+f++l+
  Bv9_209790_gwcy.t1  30 CWAEQATFSLIEAWGSQHLALNRGNLRQHNWSQVAAAVnsaVSGRRKTDVQTCKNRIDTLKKKYKIEKSKTVDSAGDYVSPWPFFSRLD 118
                         7*************************************76333333447899*******************999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1929119No hitNo description
PROSITE profilePS510298.82531125IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDTTSRSPAL RQPRPQPITS RPSPVLRPDC WAEQATFSLI EAWGSQHLAL NRGNLRQHNW  60
SQVAAAVNSA VSGRRKTDVQ TCKNRIDTLK KKYKIEKSKT VDSAGDYVSP WPFFSRLDFL  120
ISGGDVAGNS LSSSRKLSPE TPSTTTALRN FPVGPRSATQ RKRPAIIDGS FLPFAAVVAA  180
AAKEEERERS SSERTGTSSG EGKRDRDREE EVEDGGFNDG CRRLAEAVMR FGEVYERVEA  240
VKQEQLIELE KHRMQFAKDL EYQRMKLFMD TQIQLARIKR PKHSDDADSY L
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689829.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-21ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0K9RWV01e-126A0A0K9RWV0_SPIOL; Uncharacterized protein
STRINGXP_010689829.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-38sequence-specific DNA binding transcription factors