PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_211810_xraf.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 388aa    MW: 43270.1 Da    PI: 6.838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_211810_xraf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88e-08279319954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  Bv9_211810_xraf.t1 279 ARQRRERISERLRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 319
                         69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.945270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14276332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.78E-11276324No hitNo description
Gene3DG3DSA:4.10.280.101.3E-11278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-5279319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MDGCSSMAQW SNIYHHQGLE TSRSISLMLD PIHEDDNGGG LTGIIPWDNG GAQRDELCCS  60
SIPIMSPLLS GLIPNNIVHS QPFDASTKVT SSANSLDQQS LECLLSGTNS NTDTSVEDND  120
DGISMIFSEC QNLLNFSSNP PTTTTTNNNN NNNNIPKKRC NNVETIIQSD HQEHPPFSIT  180
QESWRRNKRK RNDTNNNNNM NAEKFGGGGL LTSSSNISFQ QRSSSGSSIE EPDAEAIQQM  240
KEMIYRAAAF RPVNFGVEMI DRPKRKNVKI SNDPQTVAAR QRRERISERL RVLQKLVPGG  300
SKMDTASMLD EAANYLKFLR NQVKALETLG NKVDHYHYSP NTSTNHLFHP INLQFTPMPF  360
SMQPTNSTTQ LFSLQNPNHN HLHVLPKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279284RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690114.10.0PREDICTED: transcription factor bHLH87
RefseqXP_019107448.10.0PREDICTED: transcription factor bHLH87
TrEMBLA0A0K9RKT11e-158A0A0K9RKT1_SPIOL; Uncharacterized protein
STRINGXP_010690114.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-49bHLH family protein