PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_212510_nzxz.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Nin-like

Protein Properties

Length: 933aa MW: 103530 Da PI: 6.6906

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_212510_nzxz.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.5	5.4e-28	607	657	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+isl+ l++yF++++k+AAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Bv9_212510_nzxz.t1 607 QKTISLDILRQYFAGSLKEAAKSIGVCPTTLKRICRQHGIARWPSRKIKKV 657 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	596	677	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-24	609	657	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.83E-22	829	922	No hit	No description
PROSITE profile	PS51745	19.234	836	920	IPR000270	PB1 domain
SMART	SM00666	1.2E-20	836	920	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	8.0E-21	837	917	No hit	No description
CDD	cd06407	1.85E-35	837	914	No hit	No description
Pfam	PF00564	2.8E-14	838	918	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MDDGSFTPSN NPPVFGNLDY DLMDQLLNEG CWLQTADGSN LLQLSQGPGQ GQGQGEGEGQ 60 GQGSSPPTSR GLSYPSFPFL GSDPNSSSLT STPQPSKWSP KTEHGIDSEN QENNMLAKRS 120 FSWDSNELNK MLWIAPKANS GLSTSVKDRL MTAIYHLREL NRERDVLIQI WVPIKKGLKS 180 FLTTVEQPHF YQPSSTRLLH YRDVSEKYEF LADEDTKQAL GLPGRVFLGK APEWTPDVRF 240 FRQEEYPRSV FAHKYDVRGS IALPVFEKGS ALSLGVVEII MTTDKFDYRP EVESVCKALE 300 TVHLRSSDIL DTPQEQVVKG SYEAVQPEIL TVVRTVCDTL DLPLAQTWAP CSQQGKGGCW 360 HSDNNTHCVS IIDSACYVRD QRVMDFHKAC SDHHLLKSQG GIVGKAFETN QPCYATDVTE 420 FSKVEYPLSH HAKMFGLHGA VAIRLRDIYH ELNDYVLELY LPSNLQEKGL AFHARIWQSV 480 SMVIQQHCRF LQFITDKDFE QKVLNPGKLS SDNEVKETSW LSHMIDPQRK GKEVVVSLEF 540 GEEEPSKGFK VMNWSDSEPS LQLGQAVSDS ENINPDSGSK GISASSSGGR LPLGARKAVE 600 KRRTKTQKTI SLDILRQYFA GSLKEAAKSI GVCPTTLKRI CRQHGIARWP SRKIKKVDHS 660 LRKLQLVIDS VQGAEGSIQL SSFYTNFPEL NSPNTPTKPN QVSSINLNNQ PKQQQLTTQP 720 EGTIFPSGAT TSNSPASTSS SQTSTSSYCF SSGAKISSPI TTIASGSKDT STAQDPDGSL 780 KRARSEAELQ GLSKRESTDQ ILERSQSNRT LAEHPSFEAL PRLAITKSWL SREAGVFKAK 840 ATFGEEKIRF TILPTMGFQE LQQEIVKRFN LEEDFNRMGI KYLDDDKEWV LLTCNADLEE 900 CIDIHKSSGS HTIKLSLSPL SSLAGSFGSS GLS

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MDDGSFTPSN NPPVFGNLDY DLMDQLLNEG CWLQTADGSN LLQLSQGPGQ GQGQGEGEGQ  60
GQGSSPPTSR GLSYPSFPFL GSDPNSSSLT STPQPSKWSP KTEHGIDSEN QENNMLAKRS  120
FSWDSNELNK MLWIAPKANS GLSTSVKDRL MTAIYHLREL NRERDVLIQI WVPIKKGLKS  180
FLTTVEQPHF YQPSSTRLLH YRDVSEKYEF LADEDTKQAL GLPGRVFLGK APEWTPDVRF  240
FRQEEYPRSV FAHKYDVRGS IALPVFEKGS ALSLGVVEII MTTDKFDYRP EVESVCKALE  300
TVHLRSSDIL DTPQEQVVKG SYEAVQPEIL TVVRTVCDTL DLPLAQTWAP CSQQGKGGCW  360
HSDNNTHCVS IIDSACYVRD QRVMDFHKAC SDHHLLKSQG GIVGKAFETN QPCYATDVTE  420
FSKVEYPLSH HAKMFGLHGA VAIRLRDIYH ELNDYVLELY LPSNLQEKGL AFHARIWQSV  480
SMVIQQHCRF LQFITDKDFE QKVLNPGKLS SDNEVKETSW LSHMIDPQRK GKEVVVSLEF  540
GEEEPSKGFK VMNWSDSEPS LQLGQAVSDS ENINPDSGSK GISASSSGGR LPLGARKAVE  600
KRRTKTQKTI SLDILRQYFA GSLKEAAKSI GVCPTTLKRI CRQHGIARWP SRKIKKVDHS  660
LRKLQLVIDS VQGAEGSIQL SSFYTNFPEL NSPNTPTKPN QVSSINLNNQ PKQQQLTTQP  720
EGTIFPSGAT TSNSPASTSS SQTSTSSYCF SSGAKISSPI TTIASGSKDT STAQDPDGSL  780
KRARSEAELQ GLSKRESTDQ ILERSQSNRT LAEHPSFEAL PRLAITKSWL SREAGVFKAK  840
ATFGEEKIRF TILPTMGFQE LQQEIVKRFN LEEDFNRMGI KYLDDDKEWV LLTCNADLEE  900
CIDIHKSSGS HTIKLSLSPL SSLAGSFGSS GLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019107469.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A0K9QYB0	0.0	A0A0K9QYB0_SPIOL; Uncharacterized protein
STRING	XP_010690230.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein