PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_212520_jnkc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 342aa    MW: 37044 Da    PI: 8.5722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_212520_jnkc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015110129221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ Cgk+F ++  L  H+r
  Bv9_212520_jnkc.t1 110 PCTECGKTFWSWKALFGHMR 129
                         5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.4E-57285No hitNo description
SuperFamilySSF576674.48E-8109131No hitNo description
PROSITE profilePS501579.494109136IPR007087Zinc finger, C2H2
SMARTSM003550.021109131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4110131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-7111133IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.48E-8181208No hitNo description
PfamPF139121.3E-9185209IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471186213IPR007087Zinc finger, C2H2
SMARTSM003550.42186208IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576675.11E-5260285No hitNo description
PROSITE profilePS501578.933260287IPR007087Zinc finger, C2H2
PfamPF139121.3E-11260284IPR007087Zinc finger, C2H2
SMARTSM003550.3260282IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDNTPPPPPP PPQLQPQHPQ PPPPPQQLLT QPQPQPQPLC ILPPFIHDID NPQQQQQQHP  60
FPPPSTPCSS SSTTSYRKKR RSKVLHIETT TTNTTLPNKH PSGKDMTPPP CTECGKTFWS  120
WKALFGHMRC HPERQWRGIN PPPHLRRGTL PPTPPSTPRP TTSDDREVAA SLLLLASSPQ  180
VAATTFECSS CKKTFGSHQA LGGHRASHKN VKGCFAITKS SSTDVEQDHN FMIMQSGLSH  240
DEGLGLGLGL SLGLGFGVGH KCGLCYKVFP TGQALGGHMR CHWEKSEEAS TSSIGLALGP  300
VSTSNQAQSC LDLNLPAKLQ DQGASSSVNP SNNMQLELRL GI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKRRSK
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690656.11e-173PREDICTED: zinc finger protein ZAT3
SwissprotO654991e-63ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0K9R0279e-94A0A0K9R027_SPIOL; Uncharacterized protein
STRINGXP_010690656.11e-172(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-52C2H2-like zinc finger protein