PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_213890_aigt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 598aa    MW: 68321.8 Da    PI: 5.3304
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_213890_aigt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12330373755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +ErrRR+++N+++  Lr+l+P+ +      Kl+ a+iL  A++Y+++Lq
  Bv9_213890_aigt.t1 330 VAERRRRKKLNERLYLLRSLVPNiS------KLDRASILGDAIKYVQELQ 373
                         68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-169151IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.101323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-12325377No hitNo description
SuperFamilySSF474595.1E-16326385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-15329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9330373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15330384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSTMSNPMER LRQLVNSKTW DYCVLWKLSE DQRFLELMDC CCAGNDSCME NANNDVGEEF  60
LFPCRDMMFQ HPKTRSCELL AQLPSSHPLD GINMEILISN QPKWLNFSNV SDLNVNEVTM  120
GTKVLIPIPG GLAELFADKQ MNEDQNVIDY VVTQCNNLMD QATISSSSNT CAGFSVNINM  180
INELQSNPTL SDQNNGNQNI NINNESQSSM NFLQQFNYVS ETNKIMSRND FLEGANDSFQ  240
AENHHQLNSF KPLSDNGFDD LMNNPNNLHN LHVLDHSAHD RQQVDEKGPI SKHEMGRADS  300
VSDSDPLDEE DDPKYHRRRP TKGPQSKNLV AERRRRKKLN ERLYLLRSLV PNISKLDRAS  360
ILGDAIKYVQ ELQKEEKDLQ NELARNSDDE DPNNDMNIID HLHHHPHQLH QTNFSPEVST  420
ISHGPRFGPD YDQEKPRNAY QMGGGPPEGF RRSHEFESAN DKAQQMEVQV EVAQLEGNDF  480
FVKVFGEQKR GGFVRLMEAL HCLGMEIINV NMTSCISLVS YVFIVKRDSE NVQAEYLRDS  540
LLEATRNQAG FWSEMAKASS ENGNGIDHLH QNQHYALQHH LHNNHIGPFH NHFHHLSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-123313821263Transcription factor MYC2
5gnj_B6e-123313821263Transcription factor MYC2
5gnj_E6e-123313821263Transcription factor MYC2
5gnj_F6e-123313821263Transcription factor MYC2
5gnj_G6e-123313821263Transcription factor MYC2
5gnj_I6e-123313821263Transcription factor MYC2
5gnj_M6e-123313821263Transcription factor MYC2
5gnj_N6e-123313821263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316337RRRPTKGPQSKNLVAERRRRKK
2331338ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690350.10.0PREDICTED: transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A0K9Q6S81e-164A0A0K9Q6S8_SPIOL; Uncharacterized protein (Fragment)
TrEMBLA0A2N9EM131e-163A0A2N9EM13_FAGSY; Uncharacterized protein
STRINGXP_010690347.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-50bHLH family protein