PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_214370_scjj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25552.4 Da    PI: 9.5631
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_214370_scjj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+i+n + rqvtfskRr g++KKA+ELS+LCdae+ +i+fsstgkl+++ss
  Bv9_214370_scjj.t1  9 KKIDNITARQVTFSKRRRGLIKKAQELSTLCDAEIGLIVFSSTGKLFDFSS 59
                        68***********************************************96 PP
2K-box41.17.7e-15961712499
               K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                         L ke+e   r + ++ G++Le Lsl eL++Le+q+e++ ++iR  K e l+++i +l+ ke ++ +en+ L+++++
  Bv9_214370_scjj.t1  96 LSKELEDKTRDISRINGDELEGLSLDELMKLERQVERGQTRIRRAKGEKLRKEIVTLKGKEIQMAKENQILKEQMK 171
                         667777777889999*********************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-27171IPR002100Transcription factor, MADS-box
CDDcd002651.50E-35370No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.03486176IPR002487Transcription factor, K-box
PfamPF014865.9E-1295170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVRQRIQIKK IDNITARQVT FSKRRRGLIK KAQELSTLCD AEIGLIVFSS TGKLFDFSSS  60
RMAEVLQRHM LHADNLNKLE DTSLQLEAED GLCNILSKEL EDKTRDISRI NGDELEGLSL  120
DELMKLERQV ERGQTRIRRA KGEKLRKEIV TLKGKEIQMA KENQILKEQM KDCSKEHFYL  180
VQLGKTPESN TGIPSSAAIP WLPQQDSFNT FLTLGPTMHN RNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18169169MEF2C
5f28_B3e-18169169MEF2C
5f28_C3e-18169169MEF2C
5f28_D3e-18169169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690400.11e-163PREDICTED: MADS-box protein AGL24
RefseqXP_010690401.11e-163PREDICTED: MADS-box protein AGL24
RefseqXP_010690402.11e-163PREDICTED: MADS-box protein AGL24
TrEMBLA0A0K9QK812e-71A0A0K9QK81_SPIOL; Uncharacterized protein
STRINGXP_010690400.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-51AGAMOUS-like 24