PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_214490_ofji.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

NAC

Protein Properties

Length: 351aa MW: 40133.9 Da PI: 5.1413

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_214490_ofji.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	2e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yL +k++g+k+el e+i+e+d+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd Bv9_214490_ofji.t1 6 LPPGFRFHPTDEELVAYYLDRKITGRKIEL-EIIPEIDLYKCEPWDLPdKsYLPGKDLEWYFFSPRDRKYPNGSRTNRATRAGYWKATGKD 95 79**************************.99***********5334445677***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s ++++vg+kktLv+ykgrap+g +t+Wvmheyrl Bv9_214490_ofji.t1 96 RPVHS-QKTAVGMKKTLVYYKGRAPHGLRTNWVMHEYRL 133 *.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.097	6	156	IPR003441	NAC domain
Pfam	PF02365	3.2E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLDRKITG RKIELEIIPE IDLYKCEPWD LPDKSYLPGK 60 DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRPVHS QKTAVGMKKT LVYYKGRAPH 120 GLRTNWVMHE YRLLESLSGS TPSLKESYAL CRVFKKTIQN NPRTKEAMGD LVIPDNDCAD 180 DDLQGYDQTN GIEITQRIRE VNQNQEHLLQ HDNHDGFTKF PSEASSELTN QEGTPTGSAL 240 STDHDLQAPL FTADEANSSA NFYPFGFDYS SNLYQDMQMA NNCFNLPPLA MDDFPQMNLS 300 ETTMLKPINH HHQETLGCDK FKEYMKGAVM FEDIFDLCST QGTSINLPLE D

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLDRKITG RKIELEIIPE IDLYKCEPWD LPDKSYLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATRAGYWK ATGKDRPVHS QKTAVGMKKT LVYYKGRAPH  120
GLRTNWVMHE YRLLESLSGS TPSLKESYAL CRVFKKTIQN NPRTKEAMGD LVIPDNDCAD  180
DDLQGYDQTN GIEITQRIRE VNQNQEHLLQ HDNHDGFTKF PSEASSELTN QEGTPTGSAL  240
STDHDLQAPL FTADEANSSA NFYPFGFDYS SNLYQDMQMA NNCFNLPPLA MDDFPQMNLS  300
ETTMLKPINH HHQETLGCDK FKEYMKGAVM FEDIFDLCST QGTSINLPLE D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	1	156	15	168	NAC domain-containing protein 19
3swm_B	2e-57	1	156	15	168	NAC domain-containing protein 19
3swm_C	2e-57	1	156	15	168	NAC domain-containing protein 19
3swm_D	2e-57	1	156	15	168	NAC domain-containing protein 19
3swp_A	2e-57	1	156	15	168	NAC domain-containing protein 19
3swp_B	2e-57	1	156	15	168	NAC domain-containing protein 19
3swp_C	2e-57	1	156	15	168	NAC domain-containing protein 19
3swp_D	2e-57	1	156	15	168	NAC domain-containing protein 19
4dul_A	2e-57	1	156	12	165	NAC domain-containing protein 19
4dul_B	2e-57	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690417.1	0.0	PREDICTED: NAC domain-containing protein 86
TrEMBL	A0A0K9QWY1	0.0	A0A0K9QWY1_SPIOL; Uncharacterized protein
STRING	XP_010690417.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	3e-93	NAC domain containing protein 20