PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_214630_fnpa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 282aa    MW: 30987.5 Da    PI: 6.5278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_214630_fnpa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.6e-071559654
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          rE++RR r+N+ f eL + l  +     +K++Ka+i   +++ +k+L
  Bv9_214630_fnpa.t1 15 AGREKQRRCRLNEQFIELGKTLDAD----RPKNDKATIISDTIQLLKDL 59
                        569*******************997....79**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-11779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.852959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-111081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-51063No hitNo description
PfamPF000101.9E-51459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-51565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MESGDPSAAK KLQKAGREKQ RRCRLNEQFI ELGKTLDADR PKNDKATIIS DTIQLLKDLT  60
AEVDKLKAEH TSLSEESREL TQEKNDLREE KTTLKSDIER LNGQCQQRLG SAYPWVGMDS  120
VLQHPPSYPY PMSIPVPSAP IPMHLSMQPY PYFGSPNPAM FANPCSTFMP YMAPNPPAEQ  180
PSADVSPSMQ PGSRTQVYAK QGIGSSSDKQ EKRINQNEDS SDVPTNLELK TPGSTTDEDK  240
SLEKKNRQKR IAAEGSSTSR CSSHSVQDSS SSSIVGGGKG ND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690444.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT232e-75BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0K9QB231e-134A0A0K9QB23_SPIOL; Uncharacterized protein
STRINGXP_010690442.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-78bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]