PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_215950_ujjq.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 667aa MW: 76002 Da PI: 6.0451

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_215950_ujjq.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.2	2.1e-31	71	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GFs+r+s+s++s+r+g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk +++gkw+v+ + +eHnHel Bv9_215950_ujjq.t1 71 SFYNSYARRIGFSTRVSSSRRSRRDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRVITRVGCKAMLSVKIQESGKWVVSGFIKEHNHEL 161 5**************************************998888545677889********************************* PP FAR1 90 ap 91 +p Bv9_215950_ujjq.t1 162 VP 163 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-30	71	163	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.6E-12	441	487	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.226	453	489	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	464	491	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence Send to blast
MENEVINFDI ELGPGATISD DAIEIDEAEL TETPFFNITT TTSAIEVGNV EFLDLEPYDG 60 MEFESEEAAK SFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RSFVCAKEGF RNLNEKRTKD 120 REIKRPRVIT RVGCKAMLSV KIQESGKWVV SGFIKEHNHE LVPPDQVHCL RSHRQIAGPA 180 KTLIDTLQAA GLGPRRIMSA LIKEYGGISR VGFTEVDCRN YMRNNKLRTM EGDFQLLVDY 240 LKQMRIESSE FYFAVQGGEC CSTGNTCQEK LSHVLLEHPG FEADFHKCVN LPESADEFES 300 CWLLLLDRYV LRDNEWLQSI YSARRQWVPV YLRDAFFAEM SITQRSDSMN SYFDGYVNAS 360 TSLSQFFKLY EKALESRNEK EVKADFETMS IPPILKTPSP MEKQASVLYT RKIFSRFQEE 420 LVGTLTFMAA KGEDDGEVIT YHVAKYGEDH KTFRVRFNVL DMKATCSCQM FEFSGLLCRH 480 VLAVFRVTNI LTLPSHYILR RWTRNAKSSV LLDDQQGSTA TTYLESHTVR YYTLRQEAFK 540 FVDEGASSSE TYDVAMAALQ EAAETVAQAA KNVGRSSMAN GRVKDSIRDG GLGSKISRND 600 DTSPHEQVSE DYMDQKIKEL SEELESSNRK CELYRANLLL VLKDIEDHKQ QLAVKVHSLK 660 LSLKDAI

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence Send to blast

MENEVINFDI ELGPGATISD DAIEIDEAEL TETPFFNITT TTSAIEVGNV EFLDLEPYDG  60
MEFESEEAAK SFYNSYARRI GFSTRVSSSR RSRRDGAIIQ RSFVCAKEGF RNLNEKRTKD  120
REIKRPRVIT RVGCKAMLSV KIQESGKWVV SGFIKEHNHE LVPPDQVHCL RSHRQIAGPA  180
KTLIDTLQAA GLGPRRIMSA LIKEYGGISR VGFTEVDCRN YMRNNKLRTM EGDFQLLVDY  240
LKQMRIESSE FYFAVQGGEC CSTGNTCQEK LSHVLLEHPG FEADFHKCVN LPESADEFES  300
CWLLLLDRYV LRDNEWLQSI YSARRQWVPV YLRDAFFAEM SITQRSDSMN SYFDGYVNAS  360
TSLSQFFKLY EKALESRNEK EVKADFETMS IPPILKTPSP MEKQASVLYT RKIFSRFQEE  420
LVGTLTFMAA KGEDDGEVIT YHVAKYGEDH KTFRVRFNVL DMKATCSCQM FEFSGLLCRH  480
VLAVFRVTNI LTLPSHYILR RWTRNAKSSV LLDDQQGSTA TTYLESHTVR YYTLRQEAFK  540
FVDEGASSSE TYDVAMAALQ EAAETVAQAA KNVGRSSMAN GRVKDSIRDG GLGSKISRND  600
DTSPHEQVSE DYMDQKIKEL SEELESSNRK CELYRANLLL VLKDIEDHKQ QLAVKVHSLK  660
LSLKDAI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690587.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0K9RV79	0.0	A0A0K9RV79_SPIOL; Uncharacterized protein
STRING	XP_010690587.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]