PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_216560_hxtz.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 316aa    MW: 34828 Da    PI: 8.2094
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_216560_hxtz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.7e-20239272134
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                         Cs+C++tkTp+WR gp+g+ktLCnaCG+++++ +
  Bv9_216560_hxtz.t1 239 CSHCQVTKTPQWRAGPSGPKTLCNACGVRFKSGR 272
                         *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.6E-731315IPR016679Transcription factor, GATA, plant
SMARTSM004014.1E-16233287IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-14236296No hitNo description
Gene3DG3DSA:3.30.50.101.4E-15237270IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.859237269IPR000679Zinc finger, GATA-type
CDDcd002023.05E-15238295No hitNo description
PfamPF003207.0E-18239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEARALKSSY SSELAMKSVN PQNQVESFWC VTGLPTDDFS IDDFFNLPNE EQNVDGSSSF  60
FEEEEKDSFS LSSQDPIDDS NSNSTNFSPG LAIPVDDVQE LELWSHLMDD SIPDPTLACP  120
CPNLILDTTR SKPGFYNSFM NRVEPVSKPG LAFIPSAVPV KPRSKRSRTT TGSWVFGSSY  180
SYHKSESSSS PVSTLLFPPP VMQFSFGKRA AGIKKPKTKP PRASSSASLN SFSIHQRSCS  240
HCQVTKTPQW RAGPSGPKTL CNACGVRFKS GRLFPEYRPA CSPTFSSEVH SNSHRKVLEM  300
RKKKEDGSTT TPKILS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690771.10.0PREDICTED: GATA transcription factor 7
RefseqXP_019107103.10.0PREDICTED: GATA transcription factor 7
TrEMBLA0A0K9QTQ31e-115A0A0K9QTQ3_SPIOL; GATA transcription factor
STRINGXP_010690771.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.17e-46GATA transcription factor 6