PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_217290_hqxy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 480aa    MW: 53458.2 Da    PI: 6.081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_217290_hqxy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-10289336455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Bv9_217290_hqxy.t1 289 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 336
                         8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.26E-10283340No hitNo description
SuperFamilySSF474597.33E-17283354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17285352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MNRTLPEMLH CLNMPGNVIG VKGMEMSVLE RQRLVFKWQQ DQLLHVQPHQ QQQELSCFSD  60
LSVLSFLPAE AQDFQSMNMN MNYSTSPVTT GPTLNELLNR PIKADPGLEN GWMDFGMPKS  120
GVTVGSLGME SAGQVHNSPG YEMDYGISRT ISCPPSVAAA AAAVNATHDA KGREFLPSDQ  180
KLSGAAGKES FKKRKANNFT PKVVDAEEDS KSKKSKGYAE EEESKITEQH SNRRSNSSQC  240
KQKESNENNN DKKNKETSGC TSKDNSKASE LDKPDYIHVR ARRGQATDSH SLAERVRREK  300
ISERMKYLQD LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLATVN PRLDFSIDDL  360
IAKEVFAACS TSLPTMGVSP DLTHPSYLQY NPIEQMDPVS VSTVAVNPID LGLKRSISAP  420
VSIPENFLDT SYFNQIPNFL QWDPELQNIY NMDFQQGKST SFPLQTFTGT IESSNLKMEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690861.10.0PREDICTED: transcription factor HBI1
TrEMBLA0A0K9QN270.0A0A0K9QN27_SPIOL; Uncharacterized protein
STRINGXP_010690861.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.17e-60cryptochrome-interacting basic-helix-loop-helix 1