PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_217320_ofhh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 101aa    MW: 11951.3 Da    PI: 9.7539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_217320_ofhh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.4e-091558344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                        +WT+   +++ +a +++ ++   +W  +ar +  g++++++k ++
  Bv9_217320_ofhh.t1 15 SWTAKQNKQFERALALYDKDtkdRWQNVARLVE-GKSAEEVKRHY 58
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.6211166IPR017884SANT domain
SMARTSM007174.5E-71264IPR001005SANT/Myb domain
PfamPF002491.5E-61558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-61568IPR009057Homeodomain-like
SuperFamilySSF466891.05E-121569IPR009057Homeodomain-like
CDDcd001671.33E-51662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASNSYSSSR NVSSSWTAKQ NKQFERALAL YDKDTKDRWQ NVARLVEGKS AEEVKRHYEI  60
LLEDLHQIEA GRVPFPNYRQ NAANSMNFNE EQRQLRYLRL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-357101293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690864.11e-69PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0K9QN264e-46A0A0K9QN26_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010690864.15e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-35RAD-like 1