PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_218740_uhux.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 251aa MW: 29060 Da PI: 8.9405

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_218740_uhux.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56	7.2e-18	132	221	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k +++s+v+ +l++p +f++++ + e+ + tl desg +W+ k+ rk++ l++GW++F +++L +gD +vF+l++ s f Bv9_218740_uhux.t1 132 FVKPMLQSHVTGGFWLSFPLPFCKTYLPD--EDEMFTLIDESGDEWQSKYLARKNG----LSGGWRGFSIDHELVDGDALVFQLIEPSIF- 215 89**********************534..44589**********767776....**********************988888. PP .EEEEE- CS B3 92 lvvkvfr 98 +v ++r Bv9_218740_uhux.t1 216 -KVYIIR 221 .777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-21	124	222	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.54E-26	125	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.98E-25	130	221	No hit	No description
PROSITE profile	PS50863	13.112	132	223	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-25	132	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-15	132	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVTTAANYEE KRKQRLEENK KRMEQLNLHK LSQALKPSPT KNIKQSPAKK IKCRLDDLGV 60 HFPIRRSSRM ADKPPPNYKE NAVEPFREGR RVFSYKRRDL LNRVYASDEH RLYAIDRAEK 120 LESSLGSEFP AFVKPMLQSH VTGGFWLSFP LPFCKTYLPD EDEMFTLIDE SGDEWQSKYL 180 ARKNGLSGGW RGFSIDHELV DGDALVFQLI EPSIFKVYII RVNSLEEDEE ESSDENVKAA 240 VSEGKKDSRK K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691035.1	0.0	PREDICTED: B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	2e-84	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A0K9RS36	1e-123	A0A0K9RS36_SPIOL; Uncharacterized protein
STRING	XP_010691035.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-85	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]