PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_219330_krre.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 500aa MW: 58550.8 Da PI: 8.3357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_219330_krre.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.7	6.9e-22	59	142	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++ +w++ ++ leHnH l Bv9_219330_krre.t1 59 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMVRMRLVDSRRWRILEVALEHNHLL 142 69***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-19	59	142	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.052	382	418	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	392	415	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-5	393	420	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MEKESGNVGQ MRDSDGIIIP KNGSDRAELA AQNILSDGRK EFVAPAVGME FESYDDAYNY 60 YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMVR 120 MRLVDSRRWR ILEVALEHNH LLGTKMYKTL KTVDAETKRK SLCNSIAEGQ TIKLYKAVVI 180 DSTDTEYLNT CAKEIQTFPN HPNQLHLKKA VYETLKMSEF EAAWGLMVQQ FGISNHDWLR 240 SLYEDRARWV PVYLKDTVFA GMSTARPSEI LHPFFEKYVH KQTPLKEFLD KYELALHKKH 300 KEETLSDVES RNSSSLLKTR CFFEQQLSKV YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP 360 YIIFLVKERL LGEANRREIR DYEVYYNRGS AEVHCICSCF NFNGYLCRHA LCVLNYNGVE 420 EIPAKYILSR WKKDYKRLYV LDHPNNIVDS NDQIQWLNQL YRSALRVVEE GVMSLDHYRS 480 ALQAFDESLN RVHNVEEKHE

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MEKESGNVGQ MRDSDGIIIP KNGSDRAELA AQNILSDGRK EFVAPAVGME FESYDDAYNY  60
YNCYAKEVGF RVRVKNSWFK RNSKEKYGAV LCCSSQGFKR IKDVNRLRKE TRTGCPAMVR  120
MRLVDSRRWR ILEVALEHNH LLGTKMYKTL KTVDAETKRK SLCNSIAEGQ TIKLYKAVVI  180
DSTDTEYLNT CAKEIQTFPN HPNQLHLKKA VYETLKMSEF EAAWGLMVQQ FGISNHDWLR  240
SLYEDRARWV PVYLKDTVFA GMSTARPSEI LHPFFEKYVH KQTPLKEFLD KYELALHKKH  300
KEETLSDVES RNSSSLLKTR CFFEQQLSKV YTKEIFQKFQ LEVEEMYSCF STTQLHVDGP  360
YIIFLVKERL LGEANRREIR DYEVYYNRGS AEVHCICSCF NFNGYLCRHA LCVLNYNGVE  420
EIPAKYILSR WKKDYKRLYV LDHPNNIVDS NDQIQWLNQL YRSALRVVEE GVMSLDHYRS  480
ALQAFDESLN RVHNVEEKHE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691105.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	1e-148	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A0K9R590	0.0	A0A0K9R590_SPIOL; Uncharacterized protein
STRING	XP_010691105.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-151	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]