PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_219340_soxd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family FAR1
Protein Properties Length: 662aa    MW: 77432.7 Da    PI: 5.0473
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_219340_soxd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-21147230189
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         ++Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +      +r+etrtgC a++++++ ++++w+v++++leHnH +
  Bv9_219340_soxd.t1 147 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEAT-----CRRKETRTGCLAMIRLRLVETNRWRVDEVKLEHNHLF 230
                         69****************************************99888.....999********************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-19147230IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.322544580IPR007527Zinc finger, SWIM-type
PfamPF044345.5E-6552578IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-7555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MYENSSNSEV LIEEMEDQED DGDELFEIEA DDNEREGRHG FVIEGDDHEN DGEQFFEIDA  60
NIHEGNEQVL DLEAEDHCSN SQQFLEVRDH NAENDTFQVL DLDGNDQEHN QGNNMMGMDD  120
EDGLSKEKYY HPPAVGMEFE SYDDTYNYYN CYAKELGFAI RVKSSWTKRN SKEKRGAVLC  180
CNCEGFKTLK EATCRRKETR TGCLAMIRLR LVETNRWRVD EVKLEHNHLF DPERVQNSKS  240
HKKMEVGSKR NLEPTVDVEV RTIKLYRTSV IDAANSWTSS SRRTENSNHI QSCCLQLKAA  300
DSQAIHGFFC QKQLTRRPPQ TIITDRFKNI QSAISDVFPR VHHRFWLPQV MQNILLNMGQ  360
LQESEAFQSI LNVTVYRSLK IDEFESSWDN MIEQFGTRDH EWLQICYEDR EKWAPVYQRD  420
TFLAGLFAAQ VGESFIPFFA GHVHERTSIK EFFDFYDVIM QKKRLREALD DLESSGSNLL  480
LRTRCYYELQ LSKFYTKEIF EKFQVEVEMM ACCVTINQVH TSGHVCTYVV KEHENGGIKE  540
LRSFEVMYDK ATVEVRCVCG GFNLNGYLCR HALSVLNHNG VEEIPFSYIL QRWRKDCKRL  600
YVPDIRSNVI DITNPTQWYE HLHKRAMQVV EAGVVSQDHY MVAWQAFLES LNKVRLTEEK  660
HV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691106.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_019107603.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_019107604.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_019107605.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_019107606.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
RefseqXP_019107607.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A0K9R6V60.0A0A0K9R6V6_SPIOL; Uncharacterized protein
STRINGXP_010691106.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-113FAR1-related sequence 6