PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_219880_guqg.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 245aa    MW: 28168.3 Da    PI: 9.6041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_219880_guqg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12140165227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ ++r+  C+yG++C++aHg+
  Bv9_219880_guqg.t1 140 KTRPCHSWMRNKSCRYGPNCRYAHGE 165
                         9***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.5E-114074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-84174IPR000571Zinc finger, CCCH-type
SMARTSM003560.0084471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4364472IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.54584110IPR000571Zinc finger, CCCH-type
SMARTSM003562.386109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-488109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9137169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-14137170IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469138166IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10140165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MADFSTQSGN DQYQIAVEEL NFANTYMSNS PIFATRDNVA KNSMYRTGLC RDFWFKGKCN  60
YGDTCIYAHR LEDLSNSRIM NKNSTIRKMC KYFWGDCPYG VNCIFMHKPL ETYEGRQRDL  120
SRETSVVSNF PPVGVASRIK TRPCHSWMRN KSCRYGPNCR YAHGEAELRR SAPVLASKSG  180
NAWIAPPMAL VKHISLKETR KPTAAEQKLS PRVCLFKWKK NKKIVGIYAD WIDEESLMPW  240
LASES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691178.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A0K9RZD03e-64A0A0K9RZD0_SPIOL; Uncharacterized protein
STRINGXP_010691178.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-15C3H family protein