PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_221390_azoc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 254aa    MW: 28200.4 Da    PI: 5.478
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_221390_azoc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.23.9e-17100136135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C+nCgt++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Bv9_221390_azoc.t1 100 CQNCGTSEksTPAMRRGPSGPRTLCNACGLMWANKGT 136
                         **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101712.7893173IPR010402CCT domain
PfamPF062038.1E-163172IPR010402CCT domain
SMARTSM004019.3E-1394147IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.66E-1397149No hitNo description
PROSITE profilePS501149.7198150IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-1698141IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.61E-1699142No hitNo description
PROSITE patternPS003440100127IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14100136IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSSVPTSEF LLQQHNMTLG DPSCGQKISH RIASLVRFRE KRKERCFDKK IRYTCRKEVA  60
QRMHRKNGQF VSLKDRYKLA AANWDPIDGT PPPECVPRSC QNCGTSEKST PAMRRGPSGP  120
RTLCNACGLM WANKGTLRDL SKVGRNIPFQ GDPDTQSDVK PLAMEPDISY ANQEMQRSPE  180
EAKPVASESG KTSTRENEQD LLENDEAITN DSAGSLQIGS VNVTEQEALE EVTNDSGTEF  240
EIPSGFDDSM GAFY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691384.10.0PREDICTED: GATA transcription factor 19-like
SwissprotQ6Z4336e-46GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA0A0K9RKP21e-160A0A0K9RKP2_SPIOL; Uncharacterized protein
STRINGXP_010691384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-47ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]