PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_221810_wprd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family GATA
Protein Properties Length: 309aa    MW: 33847.5 Da    PI: 6.9248
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_221810_wprd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.6e-18190224135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+ kTp+WR gp g+ktLCnaCG+++++ +l
  Bv9_221810_wprd.t1 190 CLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRL 224
                         99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-811280IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.635184220IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-17184234IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14188248No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14188222IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.40E-13189236No hitNo description
PfamPF003201.7E-15190224IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEAPDFFVED LLDLSNGVDE MMTDAFFDNV TGNSTDSSTF TPASDSCNSS VSCAPSFPDS  60
YFSGADLCVP YEDVAELEWL SNFVEESFST DDLHKLQYFP AGPQQPGPVR PGPNPGAAGV  120
VPGKARSKRS RVAPCDWSTR LLMVSAPSPA TSSSEADMSP SGTKKHPPSS SGKRRDSGGP  180
EGVPGEVRRC LHCGAEKTPQ WRTGPMGPKT LCNACGVRFK SGRLVPEYRP AASPTFVSAK  240
HSNSHRKVME LRRQKEVQRH HHNHNHHQQH HQQQQFINGG DHHMIMGGGG EDYFLHHHHL  300
GGSDYRQMI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691426.10.0PREDICTED: GATA transcription factor 12
SwissprotP697819e-73GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0K9QVQ61e-141A0A0K9QVQ6_SPIOL; GATA transcription factor
STRINGXP_010691426.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-66GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]