PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_221880_kecu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 236aa    MW: 25946.5 Da    PI: 4.5967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_221880_kecu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-1962112155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Bv9_221880_kecu.t1  62 TVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFNTPEMAARAHDVAALCIKG 112
                         57*****998.**********854...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1362112IPR001471AP2/ERF domain
SMARTSM003802.6E-3863126IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2163120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-3263121IPR001471AP2/ERF domain
PROSITE profilePS5103223.05163120IPR001471AP2/ERF domain
CDDcd000183.89E-3364122No hitNo description
PRINTSPR003672.4E-106475IPR001471AP2/ERF domain
PRINTSPR003672.4E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNTPNYMFSV VAEHHNNSEP ETSQNDTSST SSSTSILNNN NNNKRKRETN NNNTSNNNSK  60
HTVYRGVRMR AWGKWVSEIR EPKKKSRIWL GTFNTPEMAA RAHDVAALCI KGNSAILNFP  120
ELSESLPRPA SSSPRDVQAA AALAAAMELE SAQAVSVSVS SSSEVNGPEE ELSQIVELPS  180
LENEVADDSA ESFFVDSAEK WTYSALWTEE MGLCENMYES TAHISLADCG VGYIYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1958120972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691437.11e-174PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ9LYD36e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0K9R2Z11e-84A0A0K9R2Z1_SPIOL; Uncharacterized protein
STRINGXP_010691437.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]