PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_222000_heoc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27414.6 Da    PI: 10.4887
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_222000_heoc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++ rqvtfskRr+g++KKA ELS+LCda   +iifsstgklyey+s
  Bv9_222000_heoc.t1 10 RIDNTTSRQVTFSKRRTGLIKKARELSILCDAHLGLIIFSSTGKLYEYAS 59
                        9***********************************************86 PP
2K-box86.45.8e-2980169998
               K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         + +++ e +q+e+a+L+++++ L++++R+l+GedL+ Ls+k+Lq+Le+qL  slk +R +K++++ e+i+e+++k + +++en +L++kl
  Bv9_222000_heoc.t1  80 TLAQDLEFWQREVARLRQQLQLLKENHRKLMGEDLSGLSIKDLQNLENQLGASLKGVRMQKDQHIAEEIKEQKRKGNLIRQENVELHHKL 169
                         567889**********************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.431161IPR002100Transcription factor, MADS-box
CDDcd002652.60E-40272No hitNo description
SuperFamilySSF554551.57E-30290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2584169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.04985175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKMVIQR IDNTTSRQVT FSKRRTGLIK KARELSILCD AHLGLIIFSS TGKLYEYAST  60
NMGSVIERYN KTRDNNQPPT LAQDLEFWQR EVARLRQQLQ LLKENHRKLM GEDLSGLSIK  120
DLQNLENQLG ASLKGVRMQK DQHIAEEIKE QKRKGNLIRQ ENVELHHKLN LAKQENLDLK  180
TKLNGAYKVT QAYQHTNMSS NVVRSEYLIK PMYLQLSQPQ SLNIDASART MKLGLQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21178175MEF2C
5f28_B2e-21178175MEF2C
5f28_C2e-21178175MEF2C
5f28_D2e-21178175MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691451.11e-175PREDICTED: MADS-box transcription factor 23
SwissprotQ6EP493e-79MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A200QXU67e-95A0A200QXU6_9MAGN; Transcription factor
STRINGXP_010691451.11e-174(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-80AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]