PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_222310_qpjr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 353aa    MW: 39886 Da    PI: 7.8864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_222310_qpjr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.8e-12177224355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h  +ErrRR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k++q
  Bv9_222310_qpjr.t1 177 MDHILAERRRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYVKQMQ 224
                         56999***********************.....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.777174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16176240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-10178224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16178235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-11179228No hitNo description
SMARTSM003535.9E-14180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEVSMFTGFT DLGMSDLNFI HHQLQVNSLD DLFGPTLLPN YGNNYDNSGS NQAISRKRSA  60
TQTDVLHQTL IEKPYKQIKS NNWNSSSYDI NHVLNSQDHD SNNSTMLSFS NNSSNSSNQN  120
SSLVTPKEEV AISNMTYPSH EMIASQASPE KKRSQLEARP RVDNRSSKLS SIPQQSMDHI  180
LAERRRREKL SQRFIALSAI IPGLKKMDKA SVLGDAIKYV KQMQERVKIL EEEAKKKPVE  240
SAVFVKRSYV SVEDDDDHLS PEKMFSDGSY PDIEVRFSDK DVLIRIHCEK KKGIFEKIIS  300
QIEEFHLVVI SSSSLAFGSS ALAVTIIAQM NSEFSMTSKD LVRKIHTTLR SFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14174227457Transcription factor MYC2
5gnj_B3e-14174227457Transcription factor MYC2
5gnj_E3e-14174227457Transcription factor MYC2
5gnj_F3e-14174227457Transcription factor MYC2
5gnj_G3e-14174227457Transcription factor MYC2
5gnj_I3e-14174227457Transcription factor MYC2
5gnj_M3e-14174227457Transcription factor MYC2
5gnj_N3e-14174227457Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187ERRRRE
2183188RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691492.10.0PREDICTED: transcription factor bHLH25
TrEMBLA0A0K9QV611e-109A0A0K9QV61_SPIOL; Uncharacterized protein
STRINGXP_010691492.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-54bHLH family protein