PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_222630_jkqo.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20651.7 Da    PI: 8.8281
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_222630_jkqo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74e-202168249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +i +k ++qvtfskRr+gi+ KA+EL+ LC+a++avi fs  gk++ +
  Bv9_222630_jkqo.t1 21 KIADKAKKQVTFSKRRKGIFNKASELCSLCNAKIAVITFSGAGKIFSF 68
                        799*****************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.8851272IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-251271IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-261399IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-171434IPR002100Transcription factor, MADS-box
PfamPF003191.5E-202168IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-173449IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-174970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAGIEQVKGK PQGRRKIPIE KIADKAKKQV TFSKRRKGIF NKASELCSLC NAKIAVITFS  60
GAGKIFSFGH PSIDEIVNRY LHGSTTSLED SLDNVNGNLS KEMLNVATCN HDLFWWEKPV  120
EGLGLEELEQ YMVLLEELRN HVASKVVNSK KDGSVALSLT PQFGLDLNKA YNPLSNDHIP  180
SDAKGII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691815.11e-135PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A0K9QQ181e-54A0A0K9QQ18_SPIOL; Uncharacterized protein
STRINGXP_010691815.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-33AGAMOUS-like 61