PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_223250_jhnw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 279aa    MW: 31314.8 Da    PI: 8.3222
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_223250_jhnw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002292114123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C + F ++  L  H++ H
  Bv9_223250_jhnw.t1  92 FSCNYCQRKFYSSQALGGHQNAH 114
                         89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-689119No hitNo description
PROSITE profilePS5015711.42792119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MIKPSNSIDA QKRDVLFSTK LAVYQEQRNN KLSDLSLDLS LCSNDFDEET YNSRVLQDNF  60
IEDNDGYTIQ NSDKTLEFQL DTNKEGEEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL  120
AKHSLKMASS SSTSINTRIS STTFGFGNHF YKNRSLLASS PYTNNNSINI SGLPLYGLYH  180
KHSHSKPLGL QAHSLIHKPS YYGASRPMVP AIIIDQQPAI GCLEFATNSA TSSSSSIVAE  240
VARFDNTILQ RNNGVNVLNN SSHKQDHDQF HKLDLSLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691616.10.0PREDICTED: zinc finger protein 1
STRINGXP_010691616.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.19e-31zinc-finger protein 1