PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_223670_usns.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

bHLH

Protein Properties

Length: 239aa MW: 25657 Da PI: 10.15

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_223670_usns.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.7e-06	122	161	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+++ ++++ L++l+ + +K + a++L +A+ YI+ L Bv9_223670_usns.t1 122 KGRREKLGERISVLQQLVSPY-----GKTDTASVLHEAIGYIRFL 161 78***************99.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.769	112	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-4	118	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-5	121	166	No hit	No description
SuperFamily	SSF47459	3.79E-12	121	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-8	122	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MGEKGRFDGE IQLPGGSFSR LLLSSDDVED KTLCLHSPLF SCNTPKMLCF GDFNSKITPK 60 VTLSTVNDKI TVSNSNKRRN GSGKESGHGS GNGQKQKNGM MKKNKPEMGS TIVTTSVPGH 120 AKGRREKLGE RISVLQQLVS PYGKTDTASV LHEAIGYIRF LHDQVKVLST PYLKRLPPSP 180 SAQQSIPDEG GANAKANSTE GLRSRGLCLI PMESMFHVAN SNGADFWSSA TIRSSGSSG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691655.1	1e-177	PREDICTED: transcription factor bHLH113
Swissprot	Q9LT67	3e-40	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0K9RGE7	2e-87	A0A0K9RGE7_SPIOL; Uncharacterized protein
STRING	XP_010691655.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	4e-37	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]