PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv9_224410_qxmk.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C3H

Protein Properties

Length: 754aa MW: 84011.5 Da PI: 5.3015

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv9_224410_qxmk.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.2e-07	164	188	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG Ck+Gd+C+F+H+ Bv9_224410_qxmk.t1 164 ICPAVAKTGdasSCKFGDKCRFSHD 188 69999*******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.882	159	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.57	161	189	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.9E-5	164	188	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.1E-4	164	190	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.9	200	225	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.62	203	228	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	6.5E-73	398	641	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	3.58E-90	402	637	No hit	No description
SuperFamily	SSF51395	2.2E-61	402	715	No hit	No description
Pfam	PF01207	1.9E-47	405	672	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	486	504	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDESVIEAPK IENTELSSQP ENSGEVHMSS ENQAAMEESP IEASIKKEPS FQPENSGEFH 60 PSSENQEVME ESPIEVSIKT EPSFQSENSG EGQLSPEKLI AKGIAPVKKE FLRPPPSSRS 120 TNLDNRDENG KSDSSKSTGI VKEKKSKRQL KRERREERES ALNICPAVAK TGDASSCKFG 180 DKCRFSHDFE AYKSQRPADL EGECPFISAQ KNCPYGVTCR FYGTHKDMPS ESLDVLQGGA 240 DVNPLKKDVQ KLLWKNKMKY PKSDAALKQL GLVGKGHTRV KEEEDIVPKI SNGSHCSEDN 300 GCEKYDTPDK QQDASAALLE PSADGVLDND DSRPLKKAKS VDDDGIDSSK DVNNGTSLSI 360 EGLVNVCTED ESHFPRDCLP PETDASLKLQ PRERKLIDFS KKLYLAPLTT VGNLPFRRVC 420 KVLGAEVTCG EMAMCTNLLQ GQSSEWALLR RHKSEDIFGV QICGAYPDTV ARAVELIDQE 480 CSVDFIDINM GCPIDIVVNK GAGSALLTKP LRMKNVIRAA CASAEKPITV KVRTGYIEGR 540 NRADLFISDF YEWGASALTI HGRSRQQRYS KAADWEYINT CVKKAPDSFQ VLGNGDVFSY 600 LDWNKHFSDC PELSSCMLAR GALIKPWLFT EIKEQRHWDI SSGERLDILK DYVRFGLEHW 660 GSDSKGVETT RHFLLEWLNY TFRYIPVGLL DVVPQNVNWR PPSYYGRNDL ETLMASESAA 720 DWIRISEMLL GKVPPGFTFA PKHKSNAYDS AENG

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDESVIEAPK IENTELSSQP ENSGEVHMSS ENQAAMEESP IEASIKKEPS FQPENSGEFH  60
PSSENQEVME ESPIEVSIKT EPSFQSENSG EGQLSPEKLI AKGIAPVKKE FLRPPPSSRS  120
TNLDNRDENG KSDSSKSTGI VKEKKSKRQL KRERREERES ALNICPAVAK TGDASSCKFG  180
DKCRFSHDFE AYKSQRPADL EGECPFISAQ KNCPYGVTCR FYGTHKDMPS ESLDVLQGGA  240
DVNPLKKDVQ KLLWKNKMKY PKSDAALKQL GLVGKGHTRV KEEEDIVPKI SNGSHCSEDN  300
GCEKYDTPDK QQDASAALLE PSADGVLDND DSRPLKKAKS VDDDGIDSSK DVNNGTSLSI  360
EGLVNVCTED ESHFPRDCLP PETDASLKLQ PRERKLIDFS KKLYLAPLTT VGNLPFRRVC  420
KVLGAEVTCG EMAMCTNLLQ GQSSEWALLR RHKSEDIFGV QICGAYPDTV ARAVELIDQE  480
CSVDFIDINM GCPIDIVVNK GAGSALLTKP LRMKNVIRAA CASAEKPITV KVRTGYIEGR  540
NRADLFISDF YEWGASALTI HGRSRQQRYS KAADWEYINT CVKKAPDSFQ VLGNGDVFSY  600
LDWNKHFSDC PELSSCMLAR GALIKPWLFT EIKEQRHWDI SSGERLDILK DYVRFGLEHW  660
GSDSKGVETT RHFLLEWLNY TFRYIPVGLL DVVPQNVNWR PPSYYGRNDL ETLMASESAA  720
DWIRISEMLL GKVPPGFTFA PKHKSNAYDS AENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	1e-26	399	646	27	266	tRNA-dihydrouridine synthase B
6ei9_B	1e-26	399	646	27	266	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665864.1	0.0	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A0J8B5L1	0.0	A0A0J8B5L1_BETVU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010665864.1	0.0	(Beta vulgaris)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]