PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_224810_ntcu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 364aa    MW: 39492.8 Da    PI: 6.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_224810_ntcu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.2e-14118163247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++WT+eE+ l++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
  Bv9_224810_ntcu.t1 118 KPWTEEEHRLFLVGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKY 163
                         58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.109.4E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.645112168IPR017930Myb domain
SuperFamilySSF466897.03E-16113167IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17115167IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-11116162IPR009057Homeodomain-like
SMARTSM007172.6E-11116166IPR001005SANT/Myb domain
PfamPF002491.7E-11118163IPR001005SANT/Myb domain
CDDcd001679.67E-10119163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MTRKCSHCSN NGHNSRTCPT RGGAVATNSS SSSVGVSGGS FNGSGGVKLF GVRLTDGSFM  60
KKSASMGNLS HYHLSSAAAS PNNTTSPSPD RLADGYLSDD PNHASCSSNR RTERKKGKPW  120
TEEEHRLFLV GLQKLGKGDW RGIARNYVVS RTPTQVASHA QKYYIRQMNA TRRKRRSSLF  180
DMVPDMVTEE PETVPEDQLL PPPSEPKDPD NTTSLPSLNL SLSTEAEPME ATSTEEVKES  240
NEPQALPNNN FTPAIPAFFV PIPYPHSFWP QPTTHPEEDN KGENSQHHQV LKPTPVLLKE  300
PVNVDELVGL SQLNLSETEN TPTVSPQLSL NLLGAPSRQS AFHASAPVSS SELNEGKNSA  360
IQAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665911.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ7XC572e-98MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A0J8B9330.0A0A0J8B933_BETVU; Uncharacterized protein
STRINGXP_010665911.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-95MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]