PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv9_225500_xmmp.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 199aa    MW: 21665.6 Da    PI: 5.5235
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv9_225500_xmmp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.11.3e-42321311100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq q++ l+
  Bv9_225500_xmmp.t1  32 PCAACKILRRRCADKCVLAPYFPPTDPLKFSIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQTQVNDLQ 122
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         a+la++++e
  Bv9_225500_xmmp.t1 123 AQLAKAQAE 131
                         *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.20931132IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-4232129IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVMVTHDSVS PSSSSCEVPP PQSHATAVVV SPCAACKILR RRCADKCVLA PYFPPTDPLK  60
FSIAHRVFGA SNIIKFLQEL PESQRADAVS SMVYEANARL RDPVYGCAGA ICQLQTQVND  120
LQAQLAKAQA ELVNMKCQQA NLLALICMEM AHQHDETPPS NTSQSQSQSP EHPNSGLSNI  180
ACFIDDNNLE GSLWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-423113910118LOB family transfactor Ramosa2.1
5ly0_B2e-423113910118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666030.11e-146PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR06e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0J8DZV51e-145A0A0J8DZV5_BETVU; Uncharacterized protein
STRINGXP_010666030.11e-146(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-64LOB domain-containing protein 1