PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001660_ufqc.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 473aa    MW: 50218 Da    PI: 7.7843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001660_ufqc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-104468327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C +++rtG+C y drC+F+H++
  Bv_001660_ufqc.t1 44 EPDCIYYLRTGFCGYADRCRFNHPR 68
                       789********************96 PP
2zf-CCCH38.71.7e-1291115327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +++C++++rtG Ck+G++Ck++H++
  Bv_001660_ufqc.t1  91 QPICQYYMRTGSCKFGSSCKYHHPR 115
                        799********************96 PP
3zf-CCCH29.81e-09136161227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C ++ +tG+Ck+G +CkF+H+p
  Bv_001660_ufqc.t1 136 GEKECTYYIKTGQCKFGMTCKFHHPP 161
                        7899********************97 PP
4zf-CCCH33.19.4e-11297322126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C+++ +tG Ck+G++Ck++H+
  Bv_001660_ufqc.t1 297 PGQPECQHYIKTGDCKFGSSCKYHHP 322
                        5789*********************8 PP
5zf-CCCH28.23.2e-09343369127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++t+ C+++a  G Ck+G +CkF H++
  Bv_001660_ufqc.t1 343 PGTSTCSYYAHHGVCKFGLTCKFDHPM 369
                        6899*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.154169IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-44168IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-74468IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-64669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-688115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.26788116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-691116IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-1091115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-593115IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-4140159IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516296324IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-7298322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5299323IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5342372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.483342370IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6343369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEREGTHSDP ALDWETQRPE TALEESMWQL GLEEPSSYPE RAGEPDCIYY LRTGFCGYAD  60
RCRFNHPRDR STSAVVRSGR VSGDYPERAG QPICQYYMRT GSCKFGSSCK YHHPRQGSSS  120
GSPFALNIYG YPLRPGEKEC TYYIKTGQCK FGMTCKFHHP PPTNVPGPAA TPAGVPPTPL  180
APPTVYSAPA PAPQPYGMVT GNWPVARPSM MPGSYIQGPY GPMLFSPGVV PLSGWAPYPG  240
STPMTGPNAQ SVGAGQFYGL MPLSPSAPVY TGHYQAIQNS AGATSSVSKE RLYPQRPGQP  300
ECQHYIKTGD CKFGSSCKYH HPSEWVVPET SSALSPMGLP LRPGTSTCSY YAHHGVCKFG  360
LTCKFDHPMG TLSYSPSTSS LSDMPVAPYP VGSSIGTLAP SSSSSDLRTE VISGSNKDLA  420
STFSTSASIS NGSGGSVLSK SGSISHSGLQ QSSQSSATSS SAERGVADEG APS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666382.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-151C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0J8B4L20.0A0A0J8B4L2_BETVU; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-135C3H family protein