PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_001660_ufqc.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 447aa    MW: 47220.8 Da    PI: 8.4506
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_001660_ufqc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-101842327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C +++rtG+C y drC+F+H++
  Bv_001660_ufqc.t2 18 EPDCIYYLRTGFCGYADRCRFNHPR 42
                       789********************96 PP
2zf-CCCH38.81.6e-126589327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C++++rtG Ck+G++Ck++H++
  Bv_001660_ufqc.t2 65 QPICQYYMRTGSCKFGSSCKYHHPR 89
                       799********************96 PP
3zf-CCCH29.99.4e-10110135227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C ++ +tG+Ck+G +CkF+H+p
  Bv_001660_ufqc.t2 110 GEKECTYYIKTGQCKFGMTCKFHHPP 135
                        7899********************97 PP
4zf-CCCH33.28.8e-11271296126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C+++ +tG Ck+G++Ck++H+
  Bv_001660_ufqc.t2 271 PGQPECQHYIKTGDCKFGSSCKYHHP 296
                        5789*********************8 PP
5zf-CCCH28.33e-09317343127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ++t+ C+++a  G Ck+G +CkF H++
  Bv_001660_ufqc.t2 317 PGTSTCSYYAHHGVCKFGLTCKFDHPM 343
                        6899*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.151543IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-41542IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-71842IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-62043IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-52142IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-66289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.2676290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-66590IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-106589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-56789IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.671108136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5110135IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4114133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516270298IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4270297IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7272296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5273297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001276296IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018316343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5316346IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.483316344IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-6317343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MWQLGLEEPS SYPERAGEPD CIYYLRTGFC GYADRCRFNH PRDRSTSAVV RSGRVSGDYP  60
ERAGQPICQY YMRTGSCKFG SSCKYHHPRQ GSSSGSPFAL NIYGYPLRPG EKECTYYIKT  120
GQCKFGMTCK FHHPPPTNVP GPAATPAGVP PTPLAPPTVY SAPAPAPQPY GMVTGNWPVA  180
RPSMMPGSYI QGPYGPMLFS PGVVPLSGWA PYPGSTPMTG PNAQSVGAGQ FYGLMPLSPS  240
APVYTGHYQA IQNSAGATSS VSKERLYPQR PGQPECQHYI KTGDCKFGSS CKYHHPSEWV  300
VPETSSALSP MGLPLRPGTS TCSYYAHHGV CKFGLTCKFD HPMGTLSYSP STSSLSDMPV  360
APYPVGSSIG TLAPSSSSSD LRTEVISGSN KDLASTFSTS ASISNGSGGS VLSKSGSISH  420
SGLQQSSQSS ATSSSAERGV ADEGAPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666382.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W911e-145C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0J8B4L20.0A0A0J8B4L2_BETVU; Uncharacterized protein
STRINGXP_010666382.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-129C3H family protein