PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003300_iwmx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 134aa    MW: 16072.7 Da    PI: 5.0197
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003300_iwmx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-192069255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+W+AeIrdp     +   r++lg+f+tae+Aa  +++a+ +++g
  Bv_003300_iwmx.t1 20 RYRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFDTAEDAAIEYDRAAVRFRG 69
                       7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-302077IPR001471AP2/ERF domain
PROSITE profilePS5103223.5382077IPR001471AP2/ERF domain
PfamPF008476.6E-122069IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-212077IPR016177DNA-binding domain
SMARTSM003801.7E-342083IPR001471AP2/ERF domain
PRINTSPR003673.2E-112132IPR001471AP2/ERF domain
CDDcd000188.93E-282476No hitNo description
PRINTSPR003673.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MENTIDYSNN GRQRRYNRNR YRGVRQRPWG KWAAEIRDPH RAVRVWLGTF DTAEDAAIEY  60
DRAAVRFRGP RAKLNFTLGD YLPQLEEYNN NHNNQDRQMI VINQELETSS FVDEQELEDW  120
VNDMIDDAPL SFRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-242178664ATERF1
3gcc_A2e-242178664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666639.11e-95PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotP930071e-28EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLA0A0J8B4573e-94A0A0J8B457_BETVU; Uncharacterized protein
STRINGXP_010666639.15e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.14e-24ERF family protein