PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003310_ipmt.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 245aa    MW: 28117.1 Da    PI: 6.0981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003310_ipmt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1889139155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GVr+++ +g+W+AeIrdp     +   r++lg+f tae+Aa+ +++a+ +++g
  Bv_003310_ipmt.t1  89 SIYRGVRQRP-SGKWAAEIRDP-----HraVRVWLGTFHTAEDAAREYDRAAVRFRG 139
                        57********.7*********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-2189149IPR016177DNA-binding domain
CDDcd000185.92E-3389149No hitNo description
PfamPF008478.3E-1189139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3090148IPR001471AP2/ERF domain
PROSITE profilePS5103223.30190147IPR001471AP2/ERF domain
SMARTSM003807.9E-3590153IPR001471AP2/ERF domain
PRINTSPR003675.3E-991102IPR001471AP2/ERF domain
PRINTSPR003675.3E-9113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKAAKTEKPD CWPLSSDQEM NIMVTALKHV ISGDPFDGSQ FVEEAIKNYQ NLSTCSPLAP  60
ATTPILPPNY ENTNTAPSIN GKKRKYKKSI YRGVRQRPSG KWAAEIRDPH RAVRVWLGTF  120
HTAEDAAREY DRAAVRFRGP DAKLNFPISN YLPQMQEQQK QNNEHQDNQE VDNNNNNHHY  180
IDNQEQQHSI NEVNNDNLIS ANQEPQSFVQ ITDGEELDHW VNALIDDSLP SFVYEEPAFK  240
RTRIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2291148361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666640.10.0PREDICTED: ethylene-responsive transcription factor ERF109
TrEMBLA0A0J8DYL20.0A0A0J8DYL2_BETVU; Uncharacterized protein
STRINGXP_010666640.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-21ethylene response factor 110