PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003320_epdu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 225aa    MW: 26298.3 Da    PI: 9.3435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003320_epdu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-1995144255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp     +   r++lg+f tae+Aak +++a+ +++g
  Bv_003320_epdu.t1  95 KYRGVRQRP-WGKWAAEIRDP-----HraVRVWLGTFHTAEDAAKEYDRAAIRFRG 144
                        8********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-3095153IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2195154IPR016177DNA-binding domain
PROSITE profilePS5103223.57895152IPR001471AP2/ERF domain
PfamPF008475.6E-1295144IPR001471AP2/ERF domain
SMARTSM003805.5E-3495158IPR001471AP2/ERF domain
PRINTSPR003671.2E-1096107IPR001471AP2/ERF domain
CDDcd000183.80E-2898151No hitNo description
PRINTSPR003671.2E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEAAKTERPE RWPLSFDQEM NIMVTALKHV ISGIKARDDL DGSQFVEEAI RNNQRLSTCS  60
PSCSATTPIL PPNYENTNSS INNGKKRKRK YKKNKYRGVR QRPWGKWAAE IRDPHRAVRV  120
WLGTFHTAED AAKEYDRAAI RFRGPHAKLN FSLSNYLPQI QDQQKQDNHN YVDNHQQQQE  180
QQQSINEQSF VQITDGEELD HWVNALIDNT LPQFLQEEPP FRRNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2292153264ATERF1
3gcc_A4e-2292153264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489KKRKRK
28492KKRKRKYKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666641.11e-170PREDICTED: ethylene-responsive transcription factor ERF098
TrEMBLA0A0J8B4S41e-169A0A0J8B4S4_BETVU; Uncharacterized protein
STRINGXP_010666641.11e-169(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-25related to AP2 6l