PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_004330_qxaa.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 346aa    MW: 37797.6 Da    PI: 7.2084
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_004330_qxaa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11278323655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri  ++ +L+el+P+     +k  s +++L +Av++Ik Lq
  Bv_004330_qxaa.t1 278 SIAERERRTRISGKLKKLQELVPNM----DKQTSYSDMLDLAVQHIKGLQ 323
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.63272322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13275335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-9276327No hitNo description
Gene3DG3DSA:4.10.280.106.1E-12277334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8278323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11278328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MYSSSSSSSQ QHSSSNTQTN PNLMRYDSAP SSLLSNTVDS VVGLGVHHQF FSNSISSAES  60
THSKLSLNPE STRNTLTLLH QGPYGLTDSS NNAINSSSSK TSSSNLIRHS SSPAGFLSHL  120
ASDTGYSGSK GFDVNYNGQG SSMGHDHMLS RLGSQMSFTR KDHHSLSQIS EVNESVLESM  180
SSHHHHEDDH KRSQSRSVSG FSLSAWDDTN DNNFIISASS SKRGKTINDD ILNGLSGIDS  240
QQAMAIEMAT MERLMHVPQD SVPCKIRAKR GCATHPRSIA ERERRTRISG KLKKLQELVP  300
NMDKQTSYSD MLDLAVQHIK GLQGQIEKLN NDLDHCTCGC KPDMEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666766.10.0PREDICTED: transcription factor bHLH128
TrEMBLA0A0J8B3U20.0A0A0J8B3U2_BETVU; Uncharacterized protein
STRINGXP_010666766.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-64bHLH family protein