PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_005810_knjd.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 333aa    MW: 37539.9 Da    PI: 5.97
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_005810_knjd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-11121167455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++ErrRR+ + + f  L +++P +     kK++K ++L +A++Y+k+Lq
  Bv_005810_knjd.t1 121 DHIIAERRRRELLSQMFISLSTIVPGL-----KKVDKTSVLGEAIKYMKQLQ 167
                        699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.151117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-9121167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-14121175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14121177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.92E-10122171No hitNo description
SMARTSM003531.4E-11123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.726251327IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDVDQSIPTL INNSHHQFQQ SETVEASFDE QLVATLGEDF PYPLSIESHT TSPQFDFDCD  60
PIEQFMLPQI TKNNNYNKDN DKIHSSNVQE DRQQCLNKEK TKNQATSSGT KRKRQPNQVQ  120
DHIIAERRRR ELLSQMFISL STIVPGLKKV DKTSVLGEAI KYMKQLQEKV KVLEDVAAKR  180
TVESVVVVKK SQLIVDDDKG LDDNESSSTV DDNCEHGVIG SNGNGGNSNE SNNQDNSLPE  240
IEVKISGKTL LLRVYCEQQK GILAKLFAEV DKHDMNVTNC SVIPFGNIAL DITIYAQMKN  300
GFNKSVRDFV RTLHSALRLA SHRDHVSRED NHT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111129RKRQPNQVQDHIIAERRRR
2125130ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666979.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C80.0A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010666979.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-51bHLH family protein