PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_006010_ajds.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 313aa    MW: 34892 Da    PI: 6.7012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_006010_ajds.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-20103152255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W++eIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  Bv_006010_ajds.t1 103 HYRGVRQRP-WGKWASEIRDPK----KaARVWLGTFDTAEAAALAYDEAALKFKG 152
                        7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-33102161IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22103161IPR016177DNA-binding domain
PROSITE profilePS5103224.671103160IPR001471AP2/ERF domain
SMARTSM003801.5E-38103166IPR001471AP2/ERF domain
PfamPF008471.7E-13103152IPR001471AP2/ERF domain
CDDcd000186.76E-21103161No hitNo description
PRINTSPR003671.7E-11104115IPR001471AP2/ERF domain
PRINTSPR003671.7E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASGGGDDDE TREISGDEYH HHHGHGVVDG GLVDFPVYSA RSQHDMSAMV QALAQVIGNS  60
SNQDTNSPAE NHVTPTHILH ANQPQNLNFQ PLETGQGDVR KRHYRGVRQR PWGKWASEIR  120
DPKKAARVWL GTFDTAEAAA LAYDEAALKF KGNKAKLNFP ERVQGKLSES GFYMPSFALQ  180
QPPPPPQQQQ LHVHQVPNYN YNYNYMMASS LPNHAQNLSY SQGETAASSY AQHPSFNYNP  240
QQYEATTGSF HLSESSSSAS YGEENHSFSS PSFSSIKMED FSPEELQQQM MFSSSSLRRR  300
SGSDHPYARH SSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-25102163163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667007.10.0PREDICTED: ethylene-responsive transcription factor ERF114
SwissprotQ9FH541e-54EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0J8B3U40.0A0A0J8B3U4_BETVU; Uncharacterized protein
STRINGXP_010667007.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]