PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_006550_ktwy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 172aa    MW: 19058.8 Da    PI: 8.6045
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_006550_ktwy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.57.3e-46131121100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvh++FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l++
  Bv_006550_ktwy.t1  13 PCAACKLLRRRCAPDCVFAPYFPADEPQKFANVHRVFGASNVNKMLQELPMQQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQT 104
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +lal+++e
  Bv_006550_ktwy.t1 105 QLALAQAE 112
                        ***99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.61512113IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4513110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKENGRKQGA ISPCAACKLL RRRCAPDCVF APYFPADEPQ KFANVHRVFG ASNVNKMLQE  60
LPMQQRGDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID VLQTQLALAQ AEVVHLRMRQ  120
LTNTTPHRHY QGTLSSENSP SSNKIISSQA KSLFSMDMVV DQPNMGESLW SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-5091217119LOB family transfactor Ramosa2.1
5ly0_B1e-5091217119LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667079.11e-128PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE99e-80LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0J8DXN71e-126A0A0J8DXN7_BETVU; Uncharacterized protein
STRINGXP_010667079.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-82LOB domain-containing protein 4